Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   VV34_RS19370 Genome accession   NZ_LN649259
Coordinates   3677170..3677892 (-) Length   240 a.a.
NCBI ID   WP_003227991.1    Uniprot ID   A0AAE2SKX0
Organism   Bacillus subtilis strain BS49     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3672170..3682892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV34_RS19335 (BS49_38660) fliW 3672309..3672740 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  VV34_RS19340 (BS49_38670) yviE 3672761..3673336 (-) 576 WP_003243053.1 DUF6470 family protein -
  VV34_RS19345 (BS49_38680) flgL 3673383..3674279 (-) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  VV34_RS19350 (BS49_38690) flgK 3674290..3675813 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  VV34_RS19355 (BS49_38700) flgN 3675832..3676314 (-) 483 WP_003227999.1 flagellar protein FlgN -
  VV34_RS19360 (BS49_38710) flgM 3676330..3676596 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  VV34_RS19365 (BS49_38720) yvyF 3676677..3677096 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  VV34_RS19370 (BS49_38730) comFC 3677170..3677892 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  VV34_RS19375 (BS49_38740) comFB 3677856..3678152 (-) 297 WP_003227989.1 late competence protein ComFB -
  VV34_RS19380 (BS49_38750) comFA 3678212..3679603 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  VV34_RS19385 (BS49_38760) fakBA 3679709..3680554 (-) 846 WP_003244125.1 DegV family protein -
  VV34_RS19390 (BS49_38770) degU 3680652..3681341 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  VV34_RS19395 (BS49_38780) degS 3681424..3682581 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27477.75 Da        Isoelectric Point: 9.0021

>NTDB_id=1113812 VV34_RS19370 WP_003227991.1 3677170..3677892(-) (comFC) [Bacillus subtilis strain BS49]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAHLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSECIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=1113812 VV34_RS19370 WP_003227991.1 3677170..3677892(-) (comFC) [Bacillus subtilis strain BS49]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACATCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGTGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment