Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   VV34_RS13545 Genome accession   NZ_LN649259
Coordinates   2574520..2574903 (-) Length   127 a.a.
NCBI ID   WP_003230168.1    Uniprot ID   -
Organism   Bacillus subtilis strain BS49     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2569520..2579903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV34_RS13505 (BS49_26990) sinI 2570454..2570627 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  VV34_RS13510 (BS49_27000) sinR 2570661..2570996 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  VV34_RS13515 (BS49_27010) tasA 2571089..2571874 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  VV34_RS13520 (BS49_27020) sipW 2571938..2572510 (-) 573 WP_003246088.1 signal peptidase I SipW -
  VV34_RS13525 (BS49_27030) tapA 2572494..2573255 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  VV34_RS13530 (BS49_27040) yqzG 2573527..2573853 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  VV34_RS13535 (BS49_27050) spoIITA 2573895..2574074 (-) 180 WP_003230176.1 YqzE family protein -
  VV34_RS13540 (BS49_27060) comGG 2574145..2574519 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  VV34_RS13545 (BS49_27070) comGF 2574520..2574903 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  VV34_RS13550 (BS49_27080) comGE 2574929..2575276 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  VV34_RS13555 (BS49_27090) comGD 2575260..2575691 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  VV34_RS13560 (BS49_27100) comGC 2575681..2575977 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  VV34_RS13565 (BS49_27110) comGB 2575991..2577028 (-) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  VV34_RS13570 (BS49_27120) comGA 2577015..2578085 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  VV34_RS13580 (BS49_27140) corA 2578497..2579450 (-) 954 WP_004399136.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14281.37 Da        Isoelectric Point: 5.8929

>NTDB_id=1113786 VV34_RS13545 WP_003230168.1 2574520..2574903(-) (comGF) [Bacillus subtilis strain BS49]
MLISGSLAAIIHLFLSRQQEHDGFTQQEWMISIEQMMNECKESQAVKTAEHGSVLICTNLSGQDIRFDIYHSMIRKRVDG
KGHVPILDHITAMKADIENGVVLLKIESEDQKVYQTAFPVYSYLGGG

Nucleotide


Download         Length: 384 bp        

>NTDB_id=1113786 VV34_RS13545 WP_003230168.1 2574520..2574903(-) (comGF) [Bacillus subtilis strain BS49]
TTGCTCATATCAGGATCGTTAGCTGCGATTATCCATCTGTTTTTGTCTCGACAGCAGGAACATGACGGTTTCACACAGCA
GGAATGGATGATTTCGATAGAACAGATGATGAATGAATGCAAGGAATCACAGGCAGTTAAGACAGCCGAGCATGGGAGCG
TGTTAATCTGCACCAATCTTTCCGGACAAGACATCCGTTTTGACATTTATCATTCAATGATAAGAAAAAGAGTGGATGGC
AAAGGGCATGTTCCGATTTTAGATCATATTACTGCCATGAAAGCTGATATTGAAAATGGTGTTGTTTTGCTGAAAATTGA
GAGTGAAGACCAAAAAGTGTATCAAACTGCTTTTCCAGTCTATTCGTATTTAGGAGGGGGGTGA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(16-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment