Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | VV34_RS13510 | Genome accession | NZ_LN649259 |
| Coordinates | 2570661..2570996 (+) | Length | 111 a.a. |
| NCBI ID | WP_003226345.1 | Uniprot ID | A0AAE2VGU9 |
| Organism | Bacillus subtilis strain BS49 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2565661..2575996
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VV34_RS13490 (BS49_26950) | gcvT | 2566253..2567341 (-) | 1089 | WP_004398598.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| VV34_RS13495 (BS49_26970) | hepAA | 2567783..2569456 (+) | 1674 | WP_004398544.1 | SNF2-related protein | - |
| VV34_RS13500 (BS49_26980) | yqhG | 2569477..2570271 (+) | 795 | WP_003230200.1 | YqhG family protein | - |
| VV34_RS13505 (BS49_26990) | sinI | 2570454..2570627 (+) | 174 | WP_003230187.1 | anti-repressor SinI | Regulator |
| VV34_RS13510 (BS49_27000) | sinR | 2570661..2570996 (+) | 336 | WP_003226345.1 | transcriptional regulator SinR | Regulator |
| VV34_RS13515 (BS49_27010) | tasA | 2571089..2571874 (-) | 786 | WP_004398632.1 | biofilm matrix protein TasA | - |
| VV34_RS13520 (BS49_27020) | sipW | 2571938..2572510 (-) | 573 | WP_003246088.1 | signal peptidase I SipW | - |
| VV34_RS13525 (BS49_27030) | tapA | 2572494..2573255 (-) | 762 | WP_004399106.1 | amyloid fiber anchoring/assembly protein TapA | - |
| VV34_RS13530 (BS49_27040) | yqzG | 2573527..2573853 (+) | 327 | WP_003246051.1 | YqzG/YhdC family protein | - |
| VV34_RS13535 (BS49_27050) | spoIITA | 2573895..2574074 (-) | 180 | WP_003230176.1 | YqzE family protein | - |
| VV34_RS13540 (BS49_27060) | comGG | 2574145..2574519 (-) | 375 | WP_003230170.1 | ComG operon protein ComGG | Machinery gene |
| VV34_RS13545 (BS49_27070) | comGF | 2574520..2574903 (-) | 384 | WP_003230168.1 | ComG operon protein ComGF | Machinery gene |
| VV34_RS13550 (BS49_27080) | comGE | 2574929..2575276 (-) | 348 | WP_003230165.1 | ComG operon protein 5 | Machinery gene |
| VV34_RS13555 (BS49_27090) | comGD | 2575260..2575691 (-) | 432 | WP_004398628.1 | comG operon protein ComGD | Machinery gene |
| VV34_RS13560 (BS49_27100) | comGC | 2575681..2575977 (-) | 297 | WP_003230162.1 | comG operon protein ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12988.64 Da Isoelectric Point: 7.2023
>NTDB_id=1113784 VV34_RS13510 WP_003226345.1 2570661..2570996(+) (sinR) [Bacillus subtilis strain BS49]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=1113784 VV34_RS13510 WP_003226345.1 2570661..2570996(+) (sinR) [Bacillus subtilis strain BS49]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |