Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SRS_RS11215 Genome accession   NZ_LN626917
Coordinates   2191023..2191418 (-) Length   131 a.a.
NCBI ID   WP_000932696.1    Uniprot ID   A0A166JXQ7
Organism   Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2186023..2196418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SRS_RS11185 thiE 2186482..2187123 (-) 642 WP_045179393.1 thiamine phosphate synthase -
  SRS_RS11190 thiM 2187125..2187916 (-) 792 WP_001108496.1 hydroxyethylthiazole kinase -
  SRS_RS11195 thiD 2187900..2188730 (-) 831 WP_000594963.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  SRS_RS11200 tenA 2188723..2189412 (-) 690 WP_000396068.1 thiaminase II -
  SRS_RS11210 sceD 2189939..2190634 (-) 696 WP_000752015.1 lytic transglycosylase SceD -
  SRS_RS11215 ssb 2191023..2191418 (-) 396 WP_000932696.1 single-stranded DNA-binding protein Machinery gene
  SRS_RS11220 - 2191612..2192052 (+) 441 WP_000846746.1 YwpF-like family protein -
  SRS_RS11225 fabZ 2192109..2192549 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  SRS_RS11230 murA 2192583..2193848 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SRS_RS11235 - 2193959..2194192 (-) 234 WP_000384523.1 DUF1146 family protein -
  SRS_RS11245 - 2195071..2195475 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15070.11 Da        Isoelectric Point: 5.6824

>NTDB_id=1113703 SRS_RS11215 WP_000932696.1 2191023..2191418(-) (ssb) [Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIERYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1113703 SRS_RS11215 WP_000932696.1 2191023..2191418(-) (ssb) [Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAGATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A166JXQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985

Multiple sequence alignment