Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   SRS_RS02600 Genome accession   NZ_LN626917
Coordinates   532122..532691 (+) Length   189 a.a.
NCBI ID   WP_045178653.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 527122..537691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SRS_RS02575 cysE 528335..528982 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  SRS_RS02580 cysS 528966..530366 (+) 1401 WP_000631982.1 cysteine--tRNA ligase -
  SRS_RS02585 - 530359..530763 (+) 405 WP_000370181.1 Mini-ribonuclease 3 -
  SRS_RS02590 rlmB 530771..531517 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SRS_RS02595 - 531517..532041 (+) 525 WP_000664740.1 NYN domain-containing protein -
  SRS_RS02600 sigH 532122..532691 (+) 570 WP_045178653.1 sigma-70 family RNA polymerase sigma factor Regulator
  SRS_RS14875 rpmG 532806..532949 (+) 144 WP_001791441.1 50S ribosomal protein L33 -
  SRS_RS02605 secE 533005..533187 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  SRS_RS02610 nusG 533200..533748 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  SRS_RS02615 rplK 533929..534351 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  SRS_RS02620 rplA 534559..535251 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  SRS_RS02625 rplJ 535523..536023 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  SRS_RS02630 rplL 536066..536434 (+) 369 WP_045178655.1 50S ribosomal protein L7/L12 -
  SRS_RS02635 - 536609..537217 (+) 609 WP_045178656.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23142.01 Da        Isoelectric Point: 9.6015

>NTDB_id=1113671 SRS_RS02600 WP_045178653.1 532122..532691(+) (sigH) [Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1]
MKYDLTTQDSTIKRNNTINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSAEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1113671 SRS_RS02600 WP_045178653.1 532122..532691(+) (sigH) [Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATACAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATACGGCGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGATTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGCAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment