Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SRS_RS01695 Genome accession   NZ_LN626917
Coordinates   355852..356838 (+) Length   328 a.a.
NCBI ID   WP_045178587.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 350852..361838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SRS_RS01675 - 351289..352935 (+) 1647 WP_045178586.1 IS1182-like element ISSau3 family transposase -
  SRS_RS01680 trpS 352962..353951 (-) 990 WP_000448933.1 tryptophan--tRNA ligase -
  SRS_RS01685 spxA 354246..354641 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  SRS_RS01690 mecA 355012..355731 (+) 720 WP_001217728.1 adaptor protein MecA -
  SRS_RS01695 coiA 355852..356838 (+) 987 WP_045178587.1 competence protein CoiA Machinery gene
  SRS_RS01700 pepF 356886..358694 (+) 1809 WP_000082722.1 oligoendopeptidase F -
  SRS_RS01705 yjbH 359154..359960 (-) 807 WP_000896691.1 protease adaptor protein YjbH -
  SRS_RS01710 - 359983..360348 (-) 366 WP_000214067.1 truncated hemoglobin YjbI -
  SRS_RS01715 - 360452..361045 (-) 594 WP_000224620.1 CYTH domain-containing protein -
  SRS_RS01720 - 361231..361578 (+) 348 WP_045178589.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38768.37 Da        Isoelectric Point: 9.7086

>NTDB_id=1113668 SRS_RS01695 WP_045178587.1 355852..356838(+) (coiA) [Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HKFNLEKKQIIMFQQIQYLGGHKYVAEKKNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDHEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=1113668 SRS_RS01695 WP_045178587.1 355852..356838(+) (coiA) [Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATAAGTTCAATTTAGAGAAAAAACAAATAATTATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAAGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAGTTACAG
TTAACTGATCACGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

96.646

100

0.966
  coiA Staphylococcus aureus N315

96.646

100

0.966

Multiple sequence alignment