Detailed information NTG1113441

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: VANGNB10_RS13805
• Genome accession: NZ_LK021130
• Coordinates: 1835999..1837423 (+)
• Length: 474 a.a.
• NCBI ID: WP_013856630.1
• Uniprot ID: -
• Organism: Vibrio anguillarum strain NB10
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1830999..1842423

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VANGNB10_RS13790 (TVA1414)	-	1831401..1833359 (-)	1959	WP_013856634.1	methyl-accepting chemotaxis protein	-
VANGNB10_RS13795 (TVA1413)	-	1833576..1834259 (+)	684	WP_013856632.1	NAD(P)H-binding protein	-
VANGNB10_RS13800 (TVA1412)	-	1834480..1835847 (+)	1368	WP_026028454.1	L-cystine transporter	-
VANGNB10_RS13805 (TVA1411)	sbcB	1835999..1837423 (+)	1425	WP_013856630.1	exodeoxyribonuclease I	Machinery gene
VANGNB10_RS13810 (TVA1410)	-	1837548..1837880 (+)	333	WP_033197434.1	CidA/LrgA family protein	-
VANGNB10_RS13815 (TVA1409)	-	1837880..1838561 (+)	682	Protein_1586	CidB/LrgB family autolysis modulator	-
VANGNB10_RS13820 (TVA1408)	cdd	1838770..1839657 (+)	888	WP_013856628.1	cytidine deaminase	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54593.05 Da
• Isoelectric Point: 5.4372

>NTDB_id=1113441 VANGNB10_RS13805 WP_013856630.1 1835999..1837423(+) (sbcB) [Vibrio anguillarum strain NB10]
MRQEHPPTFFFLDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPADYLPSPEAALITGITPQKAVAQGLPEP
EFIAKIHQQLATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGINWPENDEGFT
SFKLEHLSVANGIEHANAHDAMADVIATIELAKKVKAAQPKLFDYFFNMRHKRKLNDLIDIVNMTPLMHVSGMLGRECQY
TSWIVPIAWHPTNQNAVIVVDLAKNPQPLIDLSSEELHQRLYTKREELAEDELPVPIKLVHLNKCAILAPAKTLTAENAD
HIGVDRNLCLEHLALLKQYPEIREKLIGLYTIEREYKHSDDVDTQLYDGFFSPADKAAMEIIRQADPVNLAALDISFSDK
RIEPLLFRYRARHYPLTLSDEEQRRWATHCRDYFESHLEEYMLNLENLVHTHSSDEKKMAILKSVYRYVEDIAS

Nucleotide

• Length: 1425 bp

>NTDB_id=1113441 VANGNB10_RS13805 WP_013856630.1 1835999..1837423(+) (sbcB) [Vibrio anguillarum strain NB10]
ATGCGACAAGAGCACCCGCCTACTTTCTTTTTCCTCGACTATGAGACGTGGGGAGTCAACCCTGCGAAAGATCGTCCGAG
CCAATTTGCGGGCGTTCGCACCGATATGGATTTTAATATTATTGGTGAACCACTGGTTATCTATTGCCAACCACCAGCGG
ACTATCTGCCTTCTCCAGAAGCGGCGCTTATTACGGGTATCACACCACAAAAAGCGGTAGCCCAAGGCTTGCCAGAGCCT
GAATTTATCGCCAAAATTCATCAACAACTCGCCACACCCAACACCACCAGCCTTGGTTACAACAGTATTCGTTTTGATGA
TGAAGTAACGCGTTATACTTGCTATCGTAATTTCATTGATCCGTATGCTTGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATTTACTTGATGTGATGCGCGCCTGCCATGCACTACGCCCAGAAGGCATCAACTGGCCCGAAAATGACGAAGGCTTTACC
AGTTTTAAGCTGGAGCATCTCTCAGTTGCCAATGGCATCGAACATGCGAATGCCCACGATGCTATGGCCGATGTTATCGC
CACCATTGAGCTAGCCAAAAAAGTAAAAGCCGCCCAACCCAAGTTGTTTGATTACTTTTTTAACATGCGCCATAAACGCA
AACTCAATGATCTGATTGATATCGTCAACATGACACCTTTAATGCACGTATCGGGTATGTTAGGCCGAGAATGCCAATAC
ACCAGTTGGATCGTGCCGATTGCTTGGCATCCCACCAATCAAAATGCGGTTATTGTGGTGGACCTTGCCAAAAACCCTCA
ACCCCTGATCGATTTAAGCAGCGAAGAACTGCATCAACGTCTATATACCAAACGCGAAGAGTTGGCAGAAGATGAATTGC
CAGTGCCCATCAAATTAGTGCATCTCAATAAATGCGCTATCCTTGCGCCGGCCAAAACATTAACGGCCGAAAATGCAGAC
CATATCGGGGTCGATAGAAACCTGTGCCTTGAACACTTAGCGCTCCTCAAGCAGTACCCAGAGATCAGAGAAAAGCTGAT
TGGCCTCTACACAATTGAGCGAGAATATAAGCACAGTGACGATGTCGATACTCAACTCTACGACGGTTTCTTCTCTCCGG
CCGACAAAGCGGCGATGGAGATCATTCGCCAAGCTGATCCTGTCAACCTCGCCGCATTAGACATTAGTTTTAGCGATAAG
CGCATCGAACCCTTGCTGTTTCGCTACCGCGCTCGCCATTACCCATTAACATTAAGTGACGAAGAGCAAAGACGTTGGGC
AACTCACTGTCGTGATTATTTCGAAAGCCACCTTGAAGAGTACATGCTCAATTTAGAGAACTTAGTTCACACCCACAGCA
GTGACGAAAAGAAAATGGCTATTTTAAAATCCGTTTACCGTTATGTGGAAGACATCGCGAGTTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-191)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	80.973	99.789	0.808