Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   VANGNB10_RS08315 Genome accession   NZ_LK021130
Coordinates   572181..572798 (-) Length   205 a.a.
NCBI ID   WP_013857672.1    Uniprot ID   Q8VQC6
Organism   Vibrio anguillarum strain NB10     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 567181..577798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VANGNB10_RS08305 (TVA2073) aceF 568452..570335 (+) 1884 WP_013857674.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  VANGNB10_RS08310 (TVA2072) lpdA 570636..572063 (+) 1428 WP_013857673.1 dihydrolipoyl dehydrogenase -
  VANGNB10_RS08315 (TVA2071) opaR 572181..572798 (-) 618 WP_013857672.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  VANGNB10_RS08320 (TVA2070) hpt 573170..573700 (+) 531 WP_010319544.1 hypoxanthine phosphoribosyltransferase -
  VANGNB10_RS08325 (TVA2069) can 573785..574453 (-) 669 WP_013857670.1 carbonate dehydratase -
  VANGNB10_RS08330 (TVA2068) - 574704..576371 (+) 1668 WP_038148651.1 SulP family inorganic anion transporter -
  VANGNB10_RS08335 (TVA2067) - 576513..577433 (+) 921 WP_026027559.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23700.30 Da        Isoelectric Point: 6.3812

>NTDB_id=1113431 VANGNB10_RS08315 WP_013857672.1 572181..572798(-) (opaR) [Vibrio anguillarum strain NB10]
METSIEKRPRTRLSPQKRKLQLMEIALEVFATRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTHVVRQFSNFL
ADNIDLDLHAKDNLTNITTKMISLVIEDCHWLKVWFEWSASTREEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDRHEP
EHLATLFLGIFYSLFVQANRIQDEASMGVLVKSYLSMLCIYKKDH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=1113431 VANGNB10_RS08315 WP_013857672.1 572181..572798(-) (opaR) [Vibrio anguillarum strain NB10]
ATGGAAACATCGATAGAAAAACGCCCCAGAACTCGCTTATCACCACAAAAACGCAAACTTCAACTGATGGAAATCGCTCT
TGAAGTGTTTGCTACACGGGGAATAGGCCGAGGTGGCCACGCAGATATTGCTGAAATCGCCCAAGTTTCAGTCGCGACTG
TCTTTAACTACTTTCCAACCCGAGAAGATTTAGTCGACGACGTACTCACTCATGTTGTACGTCAGTTTTCAAACTTCCTC
GCAGATAATATTGATCTTGATTTGCATGCGAAAGATAACTTAACCAACATCACCACTAAGATGATTTCTCTTGTGATTGA
AGATTGTCACTGGTTAAAAGTATGGTTTGAATGGAGCGCTTCAACGCGCGAAGAAGTGTGGCCACTTTTTGTCTCCACCA
ACCGTACTAATCAACTTTTGGTACAAAATATGTTTATCAAAGCCATTGAACGTGGCGAAGTGTGCGATCGGCATGAGCCA
GAACATCTTGCTACGCTCTTTCTTGGTATCTTCTACTCACTGTTTGTACAAGCAAATCGTATACAAGACGAAGCCAGCAT
GGGTGTACTAGTGAAAAGCTACCTCAGCATGCTCTGCATCTATAAAAAAGATCACTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8VQC6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

81.683

98.537

0.805
  hapR Vibrio cholerae C6706

74.257

98.537

0.732
  hapR Vibrio cholerae strain A1552

74.257

98.537

0.732

Multiple sequence alignment