Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   HMPREF9318_RS08850 Genome accession   NZ_KB373319
Coordinates   191467..193218 (+) Length   583 a.a.
NCBI ID   WP_006739588.1    Uniprot ID   G5KE75
Organism   Streptococcus urinalis FB127-CNA-2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 186467..198218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9318_RS08825 (HMPREF9318_01768) - 187125..187964 (+) 840 WP_006739437.1 SDR family NAD(P)-dependent oxidoreductase -
  HMPREF9318_RS08830 (HMPREF9318_01769) - 188066..188395 (+) 330 WP_006740728.1 PadR family transcriptional regulator -
  HMPREF9318_RS08835 (HMPREF9318_01770) - 188382..188933 (+) 552 WP_006740374.1 DUF2812 domain-containing protein -
  HMPREF9318_RS08840 (HMPREF9318_01771) - 189217..189675 (+) 459 WP_006738845.1 MarR family winged helix-turn-helix transcriptional regulator -
  HMPREF9318_RS08845 (HMPREF9318_01772) rcrP 189675..191477 (+) 1803 WP_006739455.1 ABC transporter ATP-binding protein Regulator
  HMPREF9318_RS08850 (HMPREF9318_01773) rcrQ 191467..193218 (+) 1752 WP_006739588.1 ABC transporter ATP-binding protein Regulator
  HMPREF9318_RS08855 (HMPREF9318_01774) - 193234..193596 (-) 363 WP_006740096.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 64682.80 Da        Isoelectric Point: 5.6567

>NTDB_id=1113396 HMPREF9318_RS08850 WP_006739588.1 191467..193218(+) (rcrQ) [Streptococcus urinalis FB127-CNA-2]
MENKTKKSLISKMMPYVKGYRIFFLVAIVFTVISSIITVIGPDKLKEITDAITKGLTGQLDLDKIGQIAGSLAILYITGA
VVAYIANFLVTTIIQRFSQRMRDSIALKINKVPLAYFDSHSQGDTLSRVTNDVDLMTQSLNQSLGSLVSATILLVGSIIM
MFHTNVTMAWTAIGSVLIGFILSIFIMAKSQSFFKKQQANLANLNGFVEEMYTGHNLVTTYSAANESKETFTDLNHKLYK
SMWQSQFFSGIMMPMMQFIGNFGYVMVCVVGASLVIDNKITIGTIVAFMTYVRIFSQPLSQIAQAGTQLQSATAAMNRVF
EFLDEDEMLEESKKTRQLQDIKGNVSFEHVTFGYNADKVIINDFSAIAEAGQKIAIVGPTGAGKTTIVNLLMRFYEINQG
RIAIDGVNTQDMTREEVHDAFSMVLQDTWLFEGTIKENLIYNQEHITDEQVVAAAKAVGVDHFIRTLPKGYDTVLNDSLT
LSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQNAMDKLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQG
NHEALMLQNGFYADLYNSQFEAA

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=1113396 HMPREF9318_RS08850 WP_006739588.1 191467..193218(+) (rcrQ) [Streptococcus urinalis FB127-CNA-2]
ATGGAAAATAAAACAAAAAAATCCTTAATCTCTAAAATGATGCCTTATGTCAAAGGTTACCGGATCTTCTTTTTAGTTGC
TATTGTTTTTACAGTTATTTCTAGCATTATTACAGTGATAGGACCTGATAAGCTAAAAGAGATTACTGATGCTATTACAA
AAGGATTAACCGGTCAATTAGATCTAGATAAAATCGGTCAAATTGCAGGATCATTAGCGATTTTATATATCACTGGTGCA
GTTGTTGCTTATATAGCTAATTTTTTAGTGACGACGATTATTCAACGCTTCTCACAACGGATGAGAGATTCGATTGCCCT
AAAAATTAACAAGGTACCTTTAGCCTACTTTGATAGTCACTCACAAGGGGATACCTTGTCTCGTGTCACCAATGATGTGG
ATTTAATGACACAATCTTTGAACCAATCATTGGGTTCACTTGTTTCCGCTACTATTTTATTAGTAGGTTCTATTATCATG
ATGTTCCATACTAATGTAACTATGGCGTGGACTGCGATAGGATCAGTTTTAATTGGCTTTATTTTGTCAATTTTTATCAT
GGCAAAATCACAATCATTCTTCAAAAAGCAACAAGCAAATTTGGCAAATCTTAATGGTTTTGTTGAGGAAATGTATACGG
GTCATAACTTGGTGACAACCTATAGTGCTGCTAATGAATCTAAAGAAACATTTACTGACCTCAATCATAAACTTTACAAG
TCAATGTGGCAATCACAATTCTTTTCTGGCATTATGATGCCGATGATGCAATTTATTGGTAATTTTGGTTATGTCATGGT
TTGTGTCGTTGGTGCTTCTTTAGTTATTGATAACAAAATCACAATAGGAACAATTGTCGCATTTATGACTTATGTACGGA
TTTTCTCTCAACCATTATCACAAATCGCACAAGCTGGGACACAATTACAATCTGCAACAGCTGCCATGAATCGTGTTTTT
GAATTTCTTGATGAAGATGAAATGCTTGAAGAAAGTAAGAAAACACGTCAGTTACAAGATATTAAAGGGAATGTTTCATT
TGAACATGTGACCTTTGGTTATAATGCGGATAAAGTGATTATTAATGACTTTTCTGCCATTGCTGAGGCAGGTCAAAAAA
TTGCCATAGTAGGACCAACAGGTGCTGGTAAAACAACTATCGTCAATTTGCTGATGCGTTTCTATGAAATCAATCAAGGT
AGAATTGCTATTGATGGTGTCAACACTCAAGATATGACTCGTGAAGAAGTTCATGATGCTTTCTCTATGGTTTTACAAGA
TACCTGGTTATTTGAAGGCACTATCAAAGAAAATTTAATCTATAATCAAGAACACATTACTGATGAACAAGTTGTCGCCG
CTGCGAAGGCAGTTGGAGTGGATCATTTCATCAGAACCTTACCAAAAGGCTATGATACCGTCTTAAATGATTCCTTAACC
TTGTCAGTTGGTCAAAAACAACTCTTAACTATTGCGCGTGCCCTCTTGAAAGATGCCCCACTCTTAATCCTTGATGAAGC
AACATCTTCAGTTGATACAAGAACTGAAGAATTAATTCAAAATGCCATGGATAAATTAATGGAGGGTCGTACTTCCTTTG
TCATTGCACACCGTCTATCAACTATACGAAATGCTGATCTAATCTTAGTTATGAAAGATGGCAATATTATAGAACAAGGA
AATCACGAAGCGCTTATGTTACAAAATGGCTTTTATGCAGACCTTTATAATTCTCAATTTGAAGCTGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(363-509)

ABC transporter transmembrane region (ABC_membrane)

(25-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5KE75

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

74.828

99.485

0.744

Multiple sequence alignment