Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RZ44_RS08000 Genome accession   NZ_CCSE01000001
Coordinates   1618560..1619072 (+) Length   170 a.a.
NCBI ID   WP_035810209.1    Uniprot ID   A0A078MA68
Organism   Jeotgalicoccus saudimassiliensis strain 13MG44_air     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1613560..1624072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZ44_RS07970 (BN1048_01666) - 1614063..1614875 (+) 813 WP_035810201.1 ParB/RepB/Spo0J family partition protein -
  RZ44_RS07975 (BN1048_01667) - 1614977..1615750 (+) 774 WP_231856257.1 ParB/RepB/Spo0J family partition protein -
  RZ44_RS07980 (BN1048_01668) - 1615769..1616692 (+) 924 WP_052108903.1 mechanosensitive ion channel family protein -
  RZ44_RS07985 (BN1048_01669) - 1616699..1616881 (+) 183 WP_035810203.1 DUF951 domain-containing protein -
  RZ44_RS07990 (BN1048_01670) ychF 1616899..1617999 (+) 1101 WP_035810205.1 redox-regulated ATPase YchF -
  RZ44_RS07995 (BN1048_01671) rpsF 1618231..1618533 (+) 303 WP_035810207.1 30S ribosomal protein S6 -
  RZ44_RS08000 (BN1048_01672) ssbA 1618560..1619072 (+) 513 WP_035810209.1 single-stranded DNA-binding protein Machinery gene
  RZ44_RS11050 (BN1048_01673) modA 1619298..1620194 (+) 897 WP_052108904.1 molybdate ABC transporter substrate-binding protein -
  RZ44_RS08010 (BN1048_01674) modA 1620312..1621100 (+) 789 WP_052108906.1 molybdate ABC transporter substrate-binding protein -
  RZ44_RS08015 (BN1048_01675) modB 1621081..1621770 (+) 690 WP_052108908.1 molybdate ABC transporter permease subunit -
  RZ44_RS08020 (BN1048_01676) rpsR 1621989..1622228 (+) 240 WP_035810211.1 30S ribosomal protein S18 -
  RZ44_RS08025 (BN1048_01677) - 1622409..1623317 (+) 909 WP_035810214.1 VOC family protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18727.39 Da        Isoelectric Point: 4.9626

>NTDB_id=111323 RZ44_RS08000 WP_035810209.1 1618560..1619072(+) (ssbA) [Jeotgalicoccus saudimassiliensis strain 13MG44_air]
MLNRVVLVGRLTRDPELRVSQSNVAVATFNLAVNRPFAGQNGERGADFINCVVFRKQAENVNQYVKKGSLVGIDGRIQTR
NYENKDGQRVYVTEVVCESVQFLEPKGSGNQSQGNNDYNSADSYQNAYGGNQSTGNQSTGRSQQRQDNAEENPFANSKGP
VDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=111323 RZ44_RS08000 WP_035810209.1 1618560..1619072(+) (ssbA) [Jeotgalicoccus saudimassiliensis strain 13MG44_air]
ATGCTAAACCGTGTAGTTTTAGTGGGTCGCTTAACAAGAGACCCTGAACTTAGAGTCAGTCAAAGCAATGTTGCTGTCGC
TACTTTCAACTTAGCTGTGAATCGTCCATTTGCCGGCCAGAACGGTGAAAGAGGCGCTGACTTTATCAACTGTGTTGTTT
TCCGCAAACAGGCAGAGAACGTTAACCAGTATGTTAAAAAAGGCAGCTTAGTCGGAATCGACGGCAGAATTCAAACTCGT
AACTACGAGAATAAAGACGGGCAAAGAGTATATGTAACTGAAGTCGTGTGTGAAAGTGTTCAGTTCCTGGAGCCTAAAGG
CAGCGGTAATCAATCTCAAGGCAATAATGATTATAACTCTGCTGACTCTTACCAGAATGCTTACGGCGGCAACCAGTCGA
CTGGAAATCAGTCAACGGGACGCAGTCAGCAGCGTCAGGATAACGCAGAAGAAAATCCATTTGCAAACTCTAAGGGTCCA
GTAGACATCAGCGATGATGATCTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A078MA68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.222

100

0.606
  ssb Latilactobacillus sakei subsp. sakei 23K

53.107

100

0.553

Multiple sequence alignment