Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   MWH27_RS12760 Genome accession   NZ_JALJVV010000001
Coordinates   2369958..2370293 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain A-5     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2364958..2375293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWH27_RS12740 (MWH27_12715) gcvT 2365550..2366638 (-) 1089 WP_014480247.1 glycine cleavage system aminomethyltransferase GcvT -
  MWH27_RS12745 (MWH27_12720) hepAA 2367080..2368753 (+) 1674 WP_014480248.1 DEAD/DEAH box helicase -
  MWH27_RS12750 (MWH27_12725) yqhG 2368774..2369568 (+) 795 WP_014480249.1 YqhG family protein -
  MWH27_RS12755 (MWH27_12730) sinI 2369751..2369924 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  MWH27_RS12760 (MWH27_12735) sinR 2369958..2370293 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  MWH27_RS12765 (MWH27_12740) tasA 2370386..2371171 (-) 786 WP_014480250.1 biofilm matrix protein TasA -
  MWH27_RS12770 (MWH27_12745) sipW 2371235..2371807 (-) 573 WP_003230181.1 signal peptidase I SipW -
  MWH27_RS12775 (MWH27_12750) tapA 2371791..2372552 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  MWH27_RS12780 (MWH27_12755) yqzG 2372824..2373150 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  MWH27_RS12785 (MWH27_12760) spoIITA 2373192..2373371 (-) 180 WP_014480252.1 YqzE family protein -
  MWH27_RS12790 (MWH27_12765) comGG 2373442..2373816 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  MWH27_RS12795 (MWH27_12770) comGF 2373817..2374200 (-) 384 WP_014480254.1 ComG operon protein ComGF Machinery gene
  MWH27_RS12800 (MWH27_12775) comGE 2374226..2374573 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  MWH27_RS12805 (MWH27_12780) comGD 2374557..2374988 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  MWH27_RS12810 (MWH27_12785) comGC 2374978..2375274 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1113016 MWH27_RS12760 WP_003226345.1 2369958..2370293(+) (sinR) [Bacillus subtilis strain A-5]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1113016 MWH27_RS12760 WP_003226345.1 2369958..2370293(+) (sinR) [Bacillus subtilis strain A-5]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment