Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   IEC97_RS20480 Genome accession   NZ_JAEHGC010000010
Coordinates   125413..126378 (-) Length   321 a.a.
NCBI ID   WP_198312407.1    Uniprot ID   -
Organism   Neobacillus cucumis strain T4S4     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 120413..131378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IEC97_RS20455 (IEC97_20455) - 121428..122198 (-) 771 WP_198312403.1 DUF2268 domain-containing protein -
  IEC97_RS20460 (IEC97_20460) fabF 122500..123738 (-) 1239 WP_198312404.1 beta-ketoacyl-ACP synthase II -
  IEC97_RS20465 (IEC97_20465) - 123821..124753 (-) 933 WP_198312405.1 beta-ketoacyl-ACP synthase III -
  IEC97_RS20470 (IEC97_20470) - 124952..125194 (+) 243 WP_198312406.1 hypothetical protein -
  IEC97_RS20475 (IEC97_20475) comZ 125220..125417 (-) 198 WP_197031442.1 ComZ family protein Regulator
  IEC97_RS20480 (IEC97_20480) med 125413..126378 (-) 966 WP_198312407.1 BMP family ABC transporter substrate-binding protein Regulator
  IEC97_RS20485 (IEC97_20485) - 126528..127376 (-) 849 WP_198312408.1 hypothetical protein -
  IEC97_RS20490 (IEC97_20490) - 127455..128177 (-) 723 WP_198312409.1 hydrolase -
  IEC97_RS20495 (IEC97_20495) - 128373..128555 (+) 183 WP_198312410.1 YjzD family protein -
  IEC97_RS20500 (IEC97_20500) clpB 128617..131211 (-) 2595 WP_198312411.1 ATP-dependent chaperone ClpB -

Sequence

Protein


Download         Length: 321 a.a.        Molecular weight: 36227.11 Da        Isoelectric Point: 6.9152

>NTDB_id=1112756 IEC97_RS20480 WP_198312407.1 125413..126378(-) (med) [Neobacillus cucumis strain T4S4]
MLNRFGIILLCFFLLSACGETKSTGKLQKVGLLVPETVNDQVWGTKGFKGMLRIQSKFNADVYYKEGMNSEPVVKRAVKE
FSQKGVNLIFGHGSEYAEYFNDISKDYPKIHFVSFNGDAKNKNTTSLNFKGHAMGFFGGMVAAHMSKRHNVGILAAYEWQ
PEVEGFYQGALAENKNTNVDIEYVGNWDDEKKAIELVDHMMKKGVDVVYPAGDGFNVPVIENVKEHGLYVIGYVSDQSDL
GENTVLTSTIQQVDKLYELVAKQYNENHLKSGNLSFDFRDNVITLGKYSPLVNKDFRQKMNKQIEKYKQTGKLPQEGDTY
D

Nucleotide


Download         Length: 966 bp        

>NTDB_id=1112756 IEC97_RS20480 WP_198312407.1 125413..126378(-) (med) [Neobacillus cucumis strain T4S4]
ATGCTAAACCGTTTCGGGATCATTCTTTTATGCTTTTTTTTACTTAGTGCTTGTGGAGAAACAAAGTCCACCGGCAAATT
ACAGAAAGTTGGGCTGTTAGTTCCCGAAACAGTCAATGATCAAGTATGGGGGACAAAAGGCTTTAAAGGGATGCTCCGAA
TTCAATCCAAGTTTAATGCGGATGTTTATTATAAAGAAGGGATGAATTCAGAACCAGTTGTGAAACGAGCTGTTAAAGAA
TTTAGCCAAAAAGGGGTTAACTTAATTTTTGGACATGGTTCTGAATATGCCGAATACTTTAATGATATTTCCAAAGACTA
TCCCAAGATTCATTTTGTCAGCTTTAATGGTGATGCAAAAAACAAGAATACAACCAGCTTGAATTTTAAAGGGCATGCAA
TGGGTTTTTTTGGCGGGATGGTTGCTGCACATATGTCAAAAAGGCATAATGTAGGTATACTGGCTGCTTATGAATGGCAG
CCTGAAGTAGAGGGCTTTTATCAGGGGGCTTTGGCTGAAAACAAAAATACAAATGTTGACATTGAATATGTCGGCAATTG
GGATGACGAGAAAAAAGCTATCGAGTTGGTTGATCATATGATGAAAAAGGGAGTGGATGTTGTCTATCCGGCTGGAGATG
GGTTTAATGTTCCAGTGATTGAAAATGTAAAGGAACACGGATTATATGTAATTGGGTATGTATCGGACCAATCGGATTTA
GGTGAAAATACGGTTCTAACCAGCACCATTCAACAAGTGGATAAATTATATGAATTAGTGGCAAAACAATACAATGAAAA
TCATTTAAAATCGGGTAATCTTTCATTTGACTTTAGAGATAATGTGATTACATTAGGTAAATACAGTCCTCTCGTAAACA
AAGATTTTAGACAAAAAATGAACAAGCAAATTGAAAAATATAAACAAACAGGAAAATTACCACAAGAAGGAGATACATAT
GATTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(28-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

54.286

98.131

0.533

Multiple sequence alignment