Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   IEC97_RS20475 Genome accession   NZ_JAEHGC010000010
Coordinates   125220..125417 (-) Length   65 a.a.
NCBI ID   WP_197031442.1    Uniprot ID   -
Organism   Neobacillus cucumis strain T4S4     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 120220..130417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IEC97_RS20455 (IEC97_20455) - 121428..122198 (-) 771 WP_198312403.1 DUF2268 domain-containing protein -
  IEC97_RS20460 (IEC97_20460) fabF 122500..123738 (-) 1239 WP_198312404.1 beta-ketoacyl-ACP synthase II -
  IEC97_RS20465 (IEC97_20465) - 123821..124753 (-) 933 WP_198312405.1 beta-ketoacyl-ACP synthase III -
  IEC97_RS20470 (IEC97_20470) - 124952..125194 (+) 243 WP_198312406.1 hypothetical protein -
  IEC97_RS20475 (IEC97_20475) comZ 125220..125417 (-) 198 WP_197031442.1 ComZ family protein Regulator
  IEC97_RS20480 (IEC97_20480) med 125413..126378 (-) 966 WP_198312407.1 BMP family ABC transporter substrate-binding protein Regulator
  IEC97_RS20485 (IEC97_20485) - 126528..127376 (-) 849 WP_198312408.1 hypothetical protein -
  IEC97_RS20490 (IEC97_20490) - 127455..128177 (-) 723 WP_198312409.1 hydrolase -
  IEC97_RS20495 (IEC97_20495) - 128373..128555 (+) 183 WP_198312410.1 YjzD family protein -

Sequence

Protein


Download         Length: 65 a.a.        Molecular weight: 7690.87 Da        Isoelectric Point: 4.4131

>NTDB_id=1112755 IEC97_RS20475 WP_197031442.1 125220..125417(-) (comZ) [Neobacillus cucumis strain T4S4]
MNQDKSLQFMQIAMKYLPEAKDQLDKAGVELSMDLIQPFMNLFTKVMHEAYELGWEEAKKELEHE

Nucleotide


Download         Length: 198 bp        

>NTDB_id=1112755 IEC97_RS20475 WP_197031442.1 125220..125417(-) (comZ) [Neobacillus cucumis strain T4S4]
ATTAATCAAGATAAATCTTTACAATTTATGCAAATTGCAATGAAATACTTACCAGAGGCAAAGGACCAATTAGATAAGGC
AGGAGTAGAATTATCAATGGATTTGATTCAGCCTTTTATGAACCTATTTACGAAGGTAATGCATGAAGCCTATGAACTTG
GTTGGGAAGAAGCTAAGAAGGAATTAGAACACGAATAG

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

71.429

96.923

0.692

Multiple sequence alignment