Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   KHN77_RS14845 Genome accession   NZ_HG999363
Coordinates   3492734..3494128 (+) Length   464 a.a.
NCBI ID   WP_180496733.1    Uniprot ID   A0AA46HAZ5
Organism   Xanthomonas euroxanthea isolate Xanthomonas euroxanthea CPBF 761 isolated from C. illinoinensis     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3487734..3499128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHN77_RS14825 (XCY_002965) - 3488237..3488554 (+) 318 WP_147421062.1 hypothetical protein -
  KHN77_RS14830 (XCY_002966) sucD 3488636..3489511 (-) 876 WP_047124757.1 succinate--CoA ligase subunit alpha -
  KHN77_RS14835 (XCY_002967) sucC 3489536..3490705 (-) 1170 WP_016901264.1 ADP-forming succinate--CoA ligase subunit beta -
  KHN77_RS14840 (XCY_002968) - 3490928..3492541 (+) 1614 WP_104544483.1 HAMP domain-containing sensor histidine kinase -
  KHN77_RS14845 (XCY_002969) pilR 3492734..3494128 (+) 1395 WP_180496733.1 sigma-54 dependent transcriptional regulator Regulator
  KHN77_RS14850 (XCY_002970) pilB 3494427..3496163 (-) 1737 WP_119127591.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KHN77_RS14855 (XCY_002971) galE 3496283..3497260 (-) 978 WP_119127589.1 UDP-glucose 4-epimerase GalE -
  KHN77_RS14860 (XCY_002972) - 3497356..3498900 (-) 1545 WP_119127587.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50206.62 Da        Isoelectric Point: 6.6444

>NTDB_id=1112654 KHN77_RS14845 WP_180496733.1 3492734..3494128(+) (pilR) [Xanthomonas euroxanthea isolate Xanthomonas euroxanthea CPBF 761 isolated from C. illinoinensis]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPAPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKNLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALDRYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGSAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1112654 KHN77_RS14845 WP_180496733.1 3492734..3494128(+) (pilR) [Xanthomonas euroxanthea isolate Xanthomonas euroxanthea CPBF 761 isolated from C. illinoinensis]
ATGAACGAACCGAAAAGTGCCCTGGTTGTCGATGACGAGCGTGACATTCGCGAACTGCTTGTTCTCACCCTGGGCCGGAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAACAATCCCTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAACTGGTCACCGAAATCGCCAAGCACTATCCGCAGACCCCGGTGGCG
ATGATCACCGCGTTCGGAAGCATGGACCTGGCGGTGGAGGCCTTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGTGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGCCCCGCTCCGCCGGCGCCGC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCCAGCGCGATGGAAAGCTTGCGCGCCACCATCGGCAAGGTGGCGCGT
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCCCGCACCATCCACGAACAGGGCGC
CCGCGCGGCCGGTCCGTTCGTGCCGGTCAACTGCGGCGCCATCCCCGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCATGGCGGCACGCTGTTCCTGGAC
GAAGTAGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGTGCAATCCAGGAAAAATCGGTGCGCCCGGTCGGTGC
CTCCAGCGAGTCGCTGGTGGACGTGCGCATCCTCTCGGCCACGCACAAGAACCTGGGCGACCTGGTCTCCGACGGCCGTT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACCTGCCG
CAGCTGGCCGCGGCGATCATCGCGCGCCTGGCGCACAGCCATGGCCGCCCGATACCGCTACTGACCCAGTCCGCGCTCGA
TGCGCTGGACCGGTACGGCTTCCCGGGCAACGTGCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCATCGCCTGGCCGCCACCCCCGGCAGCGCCGCG
GTAGAACCGCGCGAAGCCGTGGTCGACATCGACCCCGCCTCGGCCGCCCTGCCCTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGCTGGGCATCACGTTTCGGGCGT
TGCGCTACAAGTTGAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.261

99.138

0.627
  pilR Acinetobacter baumannii strain A118

48.707

100

0.487

Multiple sequence alignment