Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   KHN94_RS11520 Genome accession   NZ_HG992758
Coordinates   2554078..2554692 (+) Length   204 a.a.
NCBI ID   WP_182008839.1    Uniprot ID   -
Organism   Vibrio sp. B1FLJ16 isolate B1REV17     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2549078..2559692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHN94_RS11500 (ACOMICROBIO_LOCUS1667) - 2549328..2550245 (-) 918 WP_182008835.1 ABC transporter ATP-binding protein -
  KHN94_RS11505 (ACOMICROBIO_LOCUS1668) - 2550533..2552203 (-) 1671 WP_182031846.1 SulP family inorganic anion transporter -
  KHN94_RS11510 (ACOMICROBIO_LOCUS1669) can 2552485..2553153 (+) 669 WP_182031847.1 carbonate dehydratase -
  KHN94_RS11515 (ACOMICROBIO_LOCUS1670) hpt 2553227..2553757 (-) 531 WP_182031848.1 hypoxanthine phosphoribosyltransferase -
  KHN94_RS11520 (ACOMICROBIO_LOCUS1671) opaR 2554078..2554692 (+) 615 WP_182008839.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  KHN94_RS11525 (ACOMICROBIO_LOCUS1672) lpdA 2554816..2556243 (-) 1428 WP_025506972.1 dihydrolipoyl dehydrogenase -
  KHN94_RS11530 (ACOMICROBIO_LOCUS1673) aceF 2556509..2558416 (-) 1908 WP_182031849.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23745.18 Da        Isoelectric Point: 6.9021

>NTDB_id=1112526 KHN94_RS11520 WP_182008839.1 2554078..2554692(+) (opaR) [Vibrio sp. B1FLJ16 isolate B1REV17]
MDSIAKRARTRLSPIKRKQQLMEIAIEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARDNIANITNAMIELVNQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEICNKHQPE
HLTNLFHGICYSLFVQANRFKGEDELKHLVNSYLDMLCIYDRVK

Nucleotide


Download         Length: 615 bp        

>NTDB_id=1112526 KHN94_RS11520 WP_182008839.1 2554078..2554692(+) (opaR) [Vibrio sp. B1FLJ16 isolate B1REV17]
ATGGACTCAATTGCAAAGAGAGCCCGTACTAGGCTTTCCCCTATCAAACGTAAGCAACAACTCATGGAAATCGCGATAGA
AGTATTTGCTCGTCGTGGCATTGGTCGAGGTGGTCATGCTGACATTGCAGAAATCGCTCAAGTTTCTGTTGCTACTGTTT
TTAACTATTTCCCAACCCGGGAAGATCTTGTTGATGAAGTGCTGAACCACGTAGTACGTCAGTTCTCAAACTTCCTATCT
GACAATATCGATCTCGATCTTCACGCTCGCGATAATATTGCTAATATCACTAACGCAATGATCGAGCTGGTCAATCAGGA
TTGCCACTGGCTGAAAGTTTGGTTTGAATGGAGTGCATCTACACGTGATGAAGTGTGGCCGCTATTCGTTTCAACTAACC
GCACTAATCAGCTACTGGTACAGAACATGTTCATCAAAGCAATTGAGCGTGGTGAAATCTGTAACAAGCATCAACCAGAG
CATTTGACCAATCTTTTCCACGGTATTTGCTACTCACTGTTTGTTCAGGCAAATCGATTTAAAGGTGAAGATGAACTGAA
ACACCTCGTCAATTCATACCTAGATATGCTCTGTATTTACGATCGAGTTAAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

91.584

99.02

0.907
  hapR Vibrio cholerae C6706

71.717

97.059

0.696
  hapR Vibrio cholerae strain A1552

71.717

97.059

0.696

Multiple sequence alignment