Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   KHO06_RS22805 Genome accession   NZ_HG992752
Coordinates   1361878..1363923 (-) Length   681 a.a.
NCBI ID   WP_212583425.1    Uniprot ID   -
Organism   Vibrio sp. B1FIG11 isolate LMG10946-nano     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1356878..1368923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHO06_RS22790 (ACOMICROBIO_LOCUS4168) - 1357930..1358916 (+) 987 WP_212582588.1 peptidoglycan DD-metalloendopeptidase family protein -
  KHO06_RS22795 (ACOMICROBIO_LMKGKHOH_03381) ylqF 1359237..1360181 (+) 945 WP_038891693.1 ribosome biogenesis GTPase YlqF -
  KHO06_RS22800 (ACOMICROBIO_LOCUS4169) cqsA 1360470..1361771 (+) 1302 WP_256859669.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  KHO06_RS22805 (ACOMICROBIO_LOCUS4170) cqsS 1361878..1363923 (-) 2046 WP_212583425.1 hybrid sensor histidine kinase/response regulator Regulator
  KHO06_RS22810 (ACOMICROBIO_LMKGKHOH_03384) - 1364227..1364844 (+) 618 WP_038891692.1 HAD family phosphatase -
  KHO06_RS22815 (ACOMICROBIO_LOCUS4171) - 1364919..1365467 (-) 549 WP_005426812.1 GNAT family N-acetyltransferase -
  KHO06_RS22820 (ACOMICROBIO_LOCUS4172) - 1365761..1366885 (+) 1125 WP_212582589.1 fatty acid desaturase -
  KHO06_RS22825 (ACOMICROBIO_LOCUS4173) dcuC 1367254..1368621 (+) 1368 WP_212582590.1 anaerobic C4-dicarboxylate transporter DcuC -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 77837.71 Da        Isoelectric Point: 5.5065

>NTDB_id=1112505 KHO06_RS22805 WP_212583425.1 1361878..1363923(-) (cqsS) [Vibrio sp. B1FIG11 isolate LMG10946-nano]
MDAIRKVYQYAEPNLTLVGWMGFVGFPIYYIVWEFMFPQPYENLPLRILCSVLFFGIIYRNRTPFEWRRFLPAYYQVVTT
LCLPCFFFYMLLMNNWSNVWVMSFMSAIFLHILLVHITSVMFAQTFAGIGLATFFAWVAQGFHLELTMDWTHVPIFLFIY
LFGNLFYFRNQVEHEAKVSIAKSFGAGIAHEMRNPLSGLLTSIDVIQSVLPNPKEGKKEQYTLSDEDVTLLREVSSDAMK
IIHSGNETIDLLLTSIDENRVSRSTFKKHSAQSVVESAIESFSYKRSTDRFAISLDVRSEFDFLGSDTLLKYVMYNLFKN
AFHHRSSEDFHIHVTMYSDEFANQIVVTDNGSGIAPEVLQSIFQDFYTTGKSGNYGLGLPFCKKVMRSFGGDIRCQSEVG
EWSQFTMTFPTIGSSAVKEIKSELTKLKTILFVSEQNILVSKVTDIARFMGFELTVLDVPAVLKKKEYEFEFDLILIDME
SLDARGSHIDKVESLLSFTEARIVYMFEHHPIQRARSVSFEPIWVETQAWLLNTRATIDRLLYDANYVVPSMPAKPLDSI
NKRTIMVVDDNESLRKFTAMLLEKQGFEVIQTEDGLQAINALNENNVDLILMDIEMPVMDGVEASRQIRGSNKAYASVPI
IAHTGDSSPITLDKIGSSGMSDFIVKPADKNRLFDKIANWI

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=1112505 KHO06_RS22805 WP_212583425.1 1361878..1363923(-) (cqsS) [Vibrio sp. B1FIG11 isolate LMG10946-nano]
ATGGACGCGATTCGCAAAGTATATCAGTACGCAGAACCCAACCTTACCCTCGTAGGATGGATGGGCTTCGTCGGCTTTCC
TATTTACTACATCGTTTGGGAGTTCATGTTCCCGCAGCCTTACGAAAACCTACCGCTTCGTATTCTCTGCTCAGTCTTAT
TCTTCGGCATCATTTATCGTAATCGTACGCCATTTGAGTGGCGTAGGTTCTTACCCGCCTATTATCAAGTGGTCACAACG
CTCTGCTTGCCTTGCTTCTTCTTTTACATGTTGCTGATGAACAACTGGTCGAATGTATGGGTGATGTCGTTTATGTCGGC
GATTTTTCTGCACATTCTGCTCGTGCATATCACATCGGTGATGTTTGCCCAGACATTTGCGGGAATTGGTCTGGCGACGT
TTTTTGCTTGGGTAGCACAGGGGTTTCACCTCGAACTCACCATGGATTGGACGCACGTACCGATCTTCTTGTTTATTTAT
CTCTTTGGTAACTTGTTCTATTTCCGAAACCAGGTAGAGCATGAAGCAAAAGTTTCAATCGCAAAGTCTTTTGGGGCAGG
TATCGCCCACGAAATGCGAAACCCACTTAGTGGTTTATTAACTTCTATCGATGTCATTCAATCCGTGTTGCCAAATCCGA
AAGAGGGCAAGAAAGAGCAGTACACGTTAAGTGATGAAGACGTGACACTGTTACGAGAAGTCAGCAGTGACGCAATGAAG
ATCATCCATTCAGGAAACGAAACCATTGATTTGCTTCTTACCTCAATTGACGAGAACCGTGTTTCTCGCTCGACATTTAA
AAAGCACTCTGCACAATCTGTCGTTGAAAGTGCGATTGAAAGTTTCAGTTACAAACGATCGACAGACCGTTTTGCTATCT
CCTTGGATGTAAGAAGTGAGTTCGATTTCTTGGGCAGCGATACGTTGCTTAAGTATGTGATGTACAACTTGTTTAAGAAC
GCCTTCCACCACCGTAGTTCAGAGGATTTCCATATTCATGTCACCATGTACAGTGATGAATTTGCCAACCAAATTGTGGT
GACTGATAACGGTTCGGGCATTGCACCAGAAGTTCTTCAAAGTATTTTCCAAGATTTCTACACTACGGGTAAGTCAGGAA
ACTATGGCCTTGGATTGCCTTTCTGTAAGAAAGTGATGCGTTCATTTGGTGGTGATATTCGTTGCCAATCAGAAGTCGGC
GAGTGGTCTCAGTTCACGATGACTTTCCCTACGATTGGCTCAAGCGCAGTCAAAGAGATTAAGAGTGAGCTAACCAAGCT
AAAAACGATTTTGTTTGTGAGTGAGCAAAACATCTTAGTTTCGAAAGTGACGGACATTGCTCGTTTTATGGGATTCGAAC
TCACGGTTCTCGATGTTCCTGCGGTTCTTAAAAAGAAAGAATACGAGTTCGAGTTTGATTTGATCCTGATCGACATGGAG
AGTTTAGACGCCCGTGGCAGCCATATAGATAAGGTTGAGTCGTTACTGTCGTTCACTGAAGCTCGCATTGTTTACATGTT
TGAGCACCATCCAATCCAAAGAGCGAGAAGCGTTTCTTTTGAACCTATTTGGGTAGAGACACAAGCCTGGCTTCTGAATA
CTCGAGCGACCATCGACCGTTTACTGTATGACGCTAATTATGTTGTTCCATCGATGCCAGCGAAGCCGCTCGATTCAATA
AACAAGCGAACCATTATGGTGGTTGACGATAATGAGTCTTTACGCAAGTTTACGGCCATGCTGCTTGAGAAGCAGGGTTT
TGAAGTGATCCAAACCGAAGATGGGCTGCAGGCAATCAACGCATTGAATGAGAACAATGTTGACTTAATCCTAATGGACA
TCGAAATGCCGGTGATGGATGGTGTAGAAGCATCTCGTCAAATTAGAGGTTCAAATAAGGCCTACGCTTCGGTACCTATT
ATTGCGCATACTGGTGATAGCTCACCGATAACACTGGACAAGATTGGTTCATCTGGCATGTCGGATTTCATCGTTAAACC
TGCGGATAAGAACAGGTTGTTCGACAAGATTGCGAACTGGATTTAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(308-410)

Response regulator receiver domain (Response_reg)

(565-677)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

48.175

100

0.485

Multiple sequence alignment