Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   KHO06_RS06115 Genome accession   NZ_HG992751
Coordinates   1343673..1345106 (+) Length   477 a.a.
NCBI ID   WP_212582243.1    Uniprot ID   -
Organism   Vibrio sp. B1FIG11 isolate LMG10946-nano     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1338673..1350106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHO06_RS06095 (ACOMICROBIO_LMKGKHOH_01863) - 1338698..1340029 (+) 1332 WP_045457981.1 hypothetical protein -
  KHO06_RS06100 (ACOMICROBIO_LMKGKHOH_01864) - 1340049..1340489 (+) 441 WP_038889848.1 hypothetical protein -
  KHO06_RS06110 (ACOMICROBIO_LOCUS928) uvrB 1341301..1343330 (+) 2030 Protein_1178 excinuclease ABC subunit UvrB -
  KHO06_RS06115 (ACOMICROBIO_LOCUS929) luxO 1343673..1345106 (+) 1434 WP_212582243.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  KHO06_RS06120 (ACOMICROBIO_LOCUS930) luxU 1345103..1345447 (+) 345 WP_038889851.1 quorum-sensing phosphorelay protein LuxU -
  KHO06_RS06125 (ACOMICROBIO_LMKGKHOH_01871) - 1345564..1346458 (-) 895 Protein_1181 YvcK family protein -
  KHO06_RS06130 (ACOMICROBIO_LOCUS932) moaA 1346756..1347746 (+) 991 Protein_1182 GTP 3',8-cyclase MoaA -
  KHO06_RS06135 (ACOMICROBIO_LOCUS933) moaB 1347847..1348359 (+) 513 WP_005433210.1 molybdenum cofactor biosynthesis protein B -
  KHO06_RS06140 (ACOMICROBIO_LOCUS934) moaC 1348386..1348862 (+) 477 WP_005433216.1 cyclic pyranopterin monophosphate synthase MoaC -
  KHO06_RS06145 (ACOMICROBIO_LOCUS935) moaD 1348862..1349119 (+) 258 WP_005433220.1 molybdopterin synthase sulfur carrier subunit -
  KHO06_RS06150 (ACOMICROBIO_LOCUS936) moaE 1349121..1349576 (+) 456 WP_005433207.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 53299.09 Da        Isoelectric Point: 5.6972

>NTDB_id=1112475 KHO06_RS06115 WP_212582243.1 1343673..1345106(+) (luxO) [Vibrio sp. B1FIG11 isolate LMG10946-nano]
MQQITEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDLILLDLRLPDMTGM
DVLHAVKKSHPDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGS
SQTMQQVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAAND
RQGAAELADGGTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYV
IPLHLPPLRERGEDVIEIAYSLLGYMSHEEGKSFVRFAQDVIERFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPP
PLNQPVVRQSVAKFIEPDIMTVSDIMPLWMTEKMAIEQAIQACEGNIPRAAGYLDVSPSTIYRKLQAWNSKDEKQNV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=1112475 KHO06_RS06115 WP_212582243.1 1343673..1345106(+) (luxO) [Vibrio sp. B1FIG11 isolate LMG10946-nano]
ATGCAACAAATAACAGAAGGTCAAAAGTCTCGTTATCTACTAATGGTAGAAGACACCGCATCCGTTGCGGCACTTTACCG
TTCTTACCTCACGCCACTTGGCATCGATATCAATATTGTTGGAACAGGCAGAGACGCCATTGAAAGCCTGAACCATCGCA
TTCCTGATCTTATTCTGCTCGATCTTCGTCTACCTGATCTTATTCTGCTCGATCTTCGTCTACCTGATATGACGGGGATG
GACGTATTGCACGCGGTGAAGAAAAGCCATCCAGACGTGCCAATCATCTTCATGACAGCCCATGGCTCTATCGATACTGC
GGTAGAGGCGATGCGTCACGGTTCTCAAGACTTCCTAATCAAACCATGTGAAGCAGACCGTTTACGTGTCACGGTGAACA
ATGCGATCCGCAAAGCAACCAAATTAAAGAATGAAGCTGACAACCCTGGTAACCAAAATTACCAAGGCTTCATCGGCAGT
AGCCAAACGATGCAGCAGGTTTACCGTACCATTGACTCGGCAGCGAGCAGTAAAGCGAGTATTTTCATCACGGGTGAAAG
TGGTACGGGTAAAGAAGTGTGTGCGGAGGCGATTCACGCAGCAAGCAAACGTGGTGATAAGCCGTTTATCGCCATCAACT
GTGCGGCAATCCCGAAAGACCTTATTGAAAGTGAGCTGTTTGGTCACGTAAAAGGTGCGTTTACTGGTGCTGCGAATGAC
CGACAAGGTGCGGCAGAGCTTGCTGATGGCGGCACGTTGTTCCTTGATGAACTCTGTGAAATGGACCTGGATCTTCAAAC
TAAGCTATTGCGCTTTATCCAAACGGGTACATTCCAAAAAGTCGGTTCTTCTAAAATGAAGAGCGTGGATGTACGCTTTG
TGTGTGCAACTAACCGAGACCCTTGGAAAGAAGTGCAAGAAGGCCGTTTCCGTGAAGACTTGTATTACCGTTTGTACGTG
ATTCCTTTGCACCTTCCGCCGCTGCGTGAGCGTGGTGAAGATGTTATTGAAATTGCATACTCGCTGCTTGGTTATATGTC
TCATGAGGAAGGCAAGAGTTTCGTCCGTTTCGCACAAGACGTGATTGAAAGATTCAACAGCTACGAATGGCCGGGTAACG
TTCGCCAATTGCAAAACGTATTACGTAATATCGTGGTACTGAACAATGGCAAAGAGATCACGCTGGATATGTTACCGCCA
CCACTGAATCAGCCTGTTGTGCGCCAATCGGTAGCAAAATTTATTGAACCTGACATCATGACGGTGTCAGATATTATGCC
GCTTTGGATGACGGAGAAAATGGCCATCGAGCAGGCAATTCAAGCGTGTGAAGGCAACATTCCACGCGCTGCTGGCTATT
TGGATGTCAGCCCATCAACGATTTATCGCAAGTTGCAAGCTTGGAATAGCAAGGACGAAAAACAAAACGTATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-132)

Sigma-54 interaction domain (Sigma54_activat)

(158-323)

Bacterial regulatory protein, Fis family (HTH_8)

(428-468)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

84.498

96.017

0.811

Multiple sequence alignment