Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   KHO06_RS03895 Genome accession   NZ_HG992751
Coordinates   838118..838735 (-) Length   205 a.a.
NCBI ID   WP_005428669.1    Uniprot ID   A0AAQ2XXV5
Organism   Vibrio sp. B1FIG11 isolate LMG10946-nano     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 833118..843735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHO06_RS03885 (ACOMICROBIO_LOCUS587) aceF 834074..835972 (+) 1899 WP_079400991.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  KHO06_RS03890 (ACOMICROBIO_LOCUS588) lpdA 836216..837646 (+) 1431 WP_005446266.1 dihydrolipoyl dehydrogenase -
  KHO06_RS03895 (ACOMICROBIO_LOCUS589) opaR 838118..838735 (-) 618 WP_005428669.1 transcriptional regulator OpaR Regulator
  KHO06_RS03900 (ACOMICROBIO_LOCUS590) hpt 839057..839586 (+) 530 Protein_737 hypoxanthine phosphoribosyltransferase -
  KHO06_RS03905 (ACOMICROBIO_LOCUS591) can 839674..840341 (-) 668 Protein_738 carbonate dehydratase -
  KHO06_RS03910 (ACOMICROBIO_LOCUS592) - 840625..842295 (+) 1671 WP_038891985.1 SulP family inorganic anion transporter -
  KHO06_RS03915 (ACOMICROBIO_LOCUS593) - 842534..843451 (+) 918 WP_005531730.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23738.02 Da        Isoelectric Point: 6.2211

>NTDB_id=1112473 KHO06_RS03895 WP_005428669.1 838118..838735(-) (opaR) [Vibrio sp. B1FIG11 isolate LMG10946-nano]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHEPE
HLANLFHGICYSIFVQANRSKSEAELTNLVSAYLDMLCIYNREHH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=1112473 KHO06_RS03895 WP_005428669.1 838118..838735(-) (opaR) [Vibrio sp. B1FIG11 isolate LMG10946-nano]
ATGGACTCAATTGCAAAGAGACCTCGTACTAGGCTTTCCCCTCTAAAACGTAAACAGCAACTGATGGAAATCGCTCTTGA
AGTGTTTGCTCGTCGCGGCATTGGTCGTGGTGGTCACGCGGATATTGCAGAGATCGCTCAAGTTTCTGTTGCGACAGTAT
TTAACTACTTCCCTACTCGTGAAGATTTGGTGGATGAAGTTCTGAACCACGTTGTGCGTCAGTTCTCTAACTTCTTGTCG
GATAACATCGACTTAGACATCCACGCGCGCGAAAACATCGCCAACATCACTAATGCAATGATTGAGCTAGTAAGCCAAGA
TTGCCATTGGCTGAAAGTTTGGTTTGAGTGGAGCGCATCGACACGTGATGAAGTATGGCCATTGTTCGTGACCACAAACC
GCACTAACCAACTTCTAGTGCAAAACATGTTCATCAAAGCGATCGAGCGTGGTGAAGTTTGTGACCAACATGAACCGGAA
CACTTGGCGAATCTGTTCCACGGTATTTGCTACTCTATTTTCGTACAAGCAAACCGCTCTAAGAGCGAAGCTGAGTTAAC
GAACCTAGTAAGTGCATACTTAGATATGCTATGCATCTACAACCGTGAACATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

96.078

99.512

0.956
  hapR Vibrio cholerae C6706

71.717

96.585

0.693
  hapR Vibrio cholerae strain A1552

71.717

96.585

0.693

Multiple sequence alignment