Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   KHN79_RS11005 Genome accession   NZ_HG992749
Coordinates   2441716..2442330 (+) Length   204 a.a.
NCBI ID   WP_182008839.1    Uniprot ID   -
Organism   Vibrio sp. B1FLJ16     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2436716..2447330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHN79_RS10985 (ACOMICROBIO_LOCUS1614) - 2436966..2437883 (-) 918 WP_182008835.1 ABC transporter ATP-binding protein -
  KHN79_RS10990 (ACOMICROBIO_LOCUS1615) - 2438171..2439841 (-) 1671 WP_182008836.1 SulP family inorganic anion transporter -
  KHN79_RS10995 (ACOMICROBIO_LOCUS1616) can 2440123..2440791 (+) 669 WP_182008837.1 carbonate dehydratase -
  KHN79_RS11000 (ACOMICROBIO_LOCUS1617) hpt 2440865..2441395 (-) 531 WP_182008838.1 hypoxanthine phosphoribosyltransferase -
  KHN79_RS11005 (ACOMICROBIO_LOCUS1618) opaR 2441716..2442330 (+) 615 WP_182008839.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  KHN79_RS11010 (ACOMICROBIO_LOCUS1619) lpdA 2442454..2443881 (-) 1428 WP_025506972.1 dihydrolipoyl dehydrogenase -
  KHN79_RS11015 (ACOMICROBIO_LOCUS1620) aceF 2444147..2446072 (-) 1926 WP_182008840.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23745.18 Da        Isoelectric Point: 6.9021

>NTDB_id=1112435 KHN79_RS11005 WP_182008839.1 2441716..2442330(+) (opaR) [Vibrio sp. B1FLJ16]
MDSIAKRARTRLSPIKRKQQLMEIAIEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARDNIANITNAMIELVNQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEICNKHQPE
HLTNLFHGICYSLFVQANRFKGEDELKHLVNSYLDMLCIYDRVK

Nucleotide


Download         Length: 615 bp        

>NTDB_id=1112435 KHN79_RS11005 WP_182008839.1 2441716..2442330(+) (opaR) [Vibrio sp. B1FLJ16]
ATGGACTCAATTGCAAAGAGAGCCCGTACTAGGCTTTCCCCTATCAAACGTAAGCAACAACTCATGGAAATCGCGATCGA
AGTGTTTGCTCGTCGTGGCATTGGTCGAGGTGGTCATGCTGACATTGCAGAAATCGCTCAAGTATCTGTTGCTACTGTTT
TTAACTATTTCCCAACCCGGGAAGATCTTGTTGATGAAGTGCTGAACCATGTAGTACGTCAGTTCTCGAACTTTTTATCA
GACAATATAGATCTCGATCTTCACGCTCGCGATAATATTGCTAATATCACTAACGCAATGATCGAGCTGGTAAATCAGGA
TTGTCACTGGCTGAAAGTTTGGTTTGAATGGAGTGCATCTACACGTGATGAAGTGTGGCCGCTATTCGTTTCAACTAACC
GCACTAATCAGCTACTTGTACAGAACATGTTCATCAAAGCAATTGAGCGTGGTGAAATCTGTAACAAGCATCAACCAGAA
CATTTGACCAACCTATTCCACGGTATTTGCTACTCACTGTTTGTTCAGGCAAATCGATTTAAAGGTGAAGATGAACTGAA
ACACCTCGTCAATTCTTACCTAGATATGCTCTGTATTTACGATCGAGTTAAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

91.584

99.02

0.907
  hapR Vibrio cholerae C6706

71.717

97.059

0.696
  hapR Vibrio cholerae strain A1552

71.717

97.059

0.696

Multiple sequence alignment