Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KHN79_RS06230 Genome accession   NZ_HG992749
Coordinates   1373425..1374846 (-) Length   473 a.a.
NCBI ID   WP_182007974.1    Uniprot ID   -
Organism   Vibrio sp. B1FLJ16     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1368425..1379846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHN79_RS06205 (ACOMICROBIO_LOCUS923) - 1368837..1369484 (+) 648 WP_182007979.1 thiopurine S-methyltransferase -
  KHN79_RS06210 (ACOMICROBIO_LOCUS924) purT 1369592..1370767 (-) 1176 WP_182007978.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  KHN79_RS06215 (ACOMICROBIO_LOCUS925) cdd 1371095..1371982 (-) 888 WP_182007977.1 cytidine deaminase -
  KHN79_RS06220 (ACOMICROBIO_LOCUS926) - 1372313..1372990 (-) 678 WP_182007976.1 CidB/LrgB family autolysis modulator -
  KHN79_RS06225 (ACOMICROBIO_FLGHMIGD_01257) - 1372992..1373366 (-) 375 WP_182007975.1 CidA/LrgA family protein -
  KHN79_RS06230 (ACOMICROBIO_LOCUS927) sbcB 1373425..1374846 (-) 1422 WP_182007974.1 exodeoxyribonuclease I Machinery gene
  KHN79_RS06235 (ACOMICROBIO_LOCUS928) - 1375278..1375664 (+) 387 WP_182007973.1 VOC family protein -
  KHN79_RS06240 (ACOMICROBIO_LOCUS929) cyaB 1375756..1376331 (+) 576 WP_182007972.1 class IV adenylate cyclase -
  KHN79_RS06245 (ACOMICROBIO_LOCUS930) - 1377022..1377402 (+) 381 WP_182007971.1 VOC family protein -
  KHN79_RS06250 (ACOMICROBIO_FLGHMIGD_01263) - 1377562..1377801 (-) 240 WP_182007970.1 RNA-binding protein -
  KHN79_RS06255 - 1378053..1378343 (+) 291 WP_182007969.1 YkgJ family cysteine cluster protein -
  KHN79_RS06260 (ACOMICROBIO_LOCUS931) - 1378351..1378902 (-) 552 WP_182007968.1 TetR/AcrR family transcriptional regulator -
  KHN79_RS06265 (ACOMICROBIO_LOCUS932) - 1378996..1379449 (+) 454 Protein_1197 HPP family protein -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54575.86 Da        Isoelectric Point: 4.8709

>NTDB_id=1112430 KHN79_RS06230 WP_182007974.1 1373425..1374846(-) (sbcB) [Vibrio sp. B1FLJ16]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGIPPQKAVQDGLSEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYACYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGIEWPENEDGFT
SFKLEHLSVRNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFEYFFSMRQKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILDLSAEELHERLYTKREELGDLLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLTNLALLRQHPEIREKLISLFAVERKFEKDDDVDTQLYDGFFSPADRTAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMMNLENLVHEHESDEKKIALLKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=1112430 KHN79_RS06230 WP_182007974.1 1373425..1374846(-) (sbcB) [Vibrio sp. B1FLJ16]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGCACCAACCCCGCCAAGGATCGTCCAAG
TCAATTCGCTGGTGTTCGTACAGATGAAAACTTCAATATCATCGGCGAACCTTTAGTTATGTATTGCCAGCCGCCTGCTG
ATTATCTCCCTTCACCTGAAGCGGCATTGATTACAGGAATTCCCCCTCAAAAGGCTGTTCAGGATGGCCTTTCTGAACCT
GAATTTATTGCCAAAATCCACGCAGAATTATCCAAGCCAAACACCACCAGTTTGGGTTACAACAGTATTCGTTTTGATGA
CGAAGTAACGCGCTATGCCTGTTACCGCAACTTCATTGATCCGTATGCATGGAGCTGGCAGAACGGCAATTCACGATGGG
ATCTACTTGATGTTATGCGTGCATGCCATGCGCTTCGTCCAGAAGGCATTGAGTGGCCTGAAAATGAAGACGGGTTTACT
AGTTTTAAGCTAGAGCATCTATCCGTTAGAAATGGGATCGAACACAGCAACGCGCATGATGCGATGGCTGACGTTATCGC
GACTATCGAGATGGCGAAAAAAGTCAAAGCTGCTCAACCTAAACTGTTTGAGTATTTCTTCTCGATGCGTCAAAAACGTA
AGCTGAACGAGCTGGTCGATATCGTCAATATGACACCTCTGATGCACGTATCAGGGATGTTAGGACGTGAGTGCCAGTAC
ACCAGCTGGATTGTTCCGGTTGCATGGCACCCGACCAATAATAATGCGGTAATCACCATTGATTTGGCAAAAGATCCTCA
GCCAATCCTTGATTTGTCCGCAGAAGAACTACATGAAAGACTATACACCAAGCGTGAAGAACTCGGTGATCTGTTACCTG
TGCCTGTCAAACTGGTACACCTGAACAAGTGCCCTATACTAGCGCCAGCAAAAACACTGACAGCTGAAAATGCAGAGTCT
ATCGGTATTGATCGTCAACAGTGTTTAACTAACCTAGCGTTACTTCGTCAGCACCCAGAGATTCGTGAGAAGCTGATCAG
CCTGTTTGCCGTTGAGCGCAAATTTGAAAAGGATGATGATGTGGATACCCAGCTTTACGATGGATTCTTCTCTCCAGCAG
ATCGCACAGCAATGGATATCATCCGAGAAACTGACCCGAACAACCTCGCAGCACTGGATATCGAATTCGATGATAAACGT
ATTAAGCCATTGCTGTTCCGTTATCGAGCCCGAAACTTCCCGGGTACGCTCGATGAACAAGAACAAAGACGCTGGGCACT
GCACTGCCGTGAAGTATTTGAAAGCCAAATCGAAGAGTACATGATGAATTTGGAAAACTTAGTTCACGAGCACGAGAGTG
ATGAAAAGAAAATCGCGCTATTAAAATCTGTTTATCGCTACGTGGAGAGCCTGGCCTCTTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

78.224

100

0.782

Multiple sequence alignment