Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   KJB05_RS09795 Genome accession   NZ_HG992742
Coordinates   2112602..2114161 (+) Length   519 a.a.
NCBI ID   WP_208444086.1    Uniprot ID   A0A812FZJ3
Organism   Vibrio sp. B1ASS3     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2107602..2119161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJB05_RS09770 (ACOMICROBIO_LOCUS1279) - 2108010..2108330 (+) 321 WP_005440957.1 STAS domain-containing protein -
  KJB05_RS09775 (ACOMICROBIO_LOCUS1280) - 2108359..2109207 (+) 849 WP_020198006.1 OmpA family protein -
  KJB05_RS09780 (ACOMICROBIO_LOCUS1281) - 2109204..2111303 (+) 2100 WP_208444083.1 SLBB domain-containing protein -
  KJB05_RS09785 (ACOMICROBIO_LOCUS1282) - 2111303..2111992 (+) 690 WP_208444084.1 AAA family ATPase -
  KJB05_RS09790 (ACOMICROBIO_LOCUS1283) - 2112005..2112388 (+) 384 WP_208444085.1 Hpt domain-containing protein -
  KJB05_RS09795 (ACOMICROBIO_LOCUS1284) luxO 2112602..2114161 (+) 1560 WP_208444086.1 sigma-54 dependent transcriptional regulator Regulator
  KJB05_RS09800 (ACOMICROBIO_LOCUS1285) - 2114136..2115212 (+) 1077 WP_208444087.1 glycosyltransferase family 4 protein -
  KJB05_RS09805 (ACOMICROBIO_LOCUS1286) - 2115365..2116549 (+) 1185 WP_208444088.1 glycosyltransferase -
  KJB05_RS09810 (ACOMICROBIO_LOCUS1287) - 2116560..2117732 (+) 1173 WP_208444089.1 glycosyltransferase family 4 protein -
  KJB05_RS09815 (ACOMICROBIO_NCLOACGD_01965) - 2117725..2119146 (+) 1422 WP_208444090.1 lipopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 519 a.a.        Molecular weight: 57760.71 Da        Isoelectric Point: 5.7713

>NTDB_id=1112395 KJB05_RS09795 WP_208444086.1 2112602..2114161(+) (luxO) [Vibrio sp. B1ASS3]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIERSKPQLIILDLKLPDMSGEDVLDWINENEIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVTLHLKRAKLENLVENIQSTFDRHNYHGFIGSSLSMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTKEMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVVPIDMPPLRERGSDI
VTLAKHFLTTYAKQDKKKFSNIDSEAQHVIKHYDWPGNVRQLQNIIRNIVVLNDDDKVTLAHLPAQLTRKPSKARTVTPP
HVESAQVAAINPVSTTTPMQAQPLESAPVETSAQPEFSSTMVTNEAPPASPAAQVSSPYFNSDGTIRPMWKVEREAIQNA
IAYCDGNVLNAAVMLELSPSTVYRKKQAWEADEANLEQS

Nucleotide


Download         Length: 1560 bp        

>NTDB_id=1112395 KJB05_RS09795 WP_208444086.1 2112602..2114161(+) (luxO) [Vibrio sp. B1ASS3]
ATGAGACCAAGGGTGTTACTGGTAGAAGACTCTACTTCACTAGCCATACTTTATAAGCAGTACGTCAAGGACGAGCCTTA
CGACATCTTCCACGTAGAGACAGGGCGTGAGGCAATTCAATTCATTGAGCGCAGCAAGCCGCAACTTATCATTCTCGACC
TTAAACTTCCGGACATGTCGGGCGAAGACGTATTGGACTGGATTAATGAAAACGAGATCCCTACTTCCGTCATCATCGCA
ACGGCGCACGGCAGTGTCGATCTCGCGGTCAATCTTATCCAGAAAGGCGCGGAAGACTTTCTAGAGAAGCCCATCAACGC
TGACCGTTTAAAAACCTCAGTCACTCTTCACTTAAAACGCGCAAAACTAGAAAATCTCGTCGAGAACATTCAATCGACCT
TCGATCGTCACAACTACCATGGTTTTATTGGCTCTAGCCTGTCGATGCAAGCGGTATACAAAACCATTGATGCGGTTGCC
CCAACCTCTGCAAGCGTGTTTATCGTTGGTGAAAGTGGTACGGGTAAAGAAGTGTGTGCAGAAGCCGTTCACAGACAAAG
CGATCGCCGAGACAAACCTTTCATTGCCATTAACTGCGGTGCTATCCCTCGTGATTTAATGGAAAGTGAAATTTTCGGTC
ACGTTAAAGGCGCATTTACTGGCGCAACCACCGACCGTAAAGGTGCAGCAACGCTTGCCCACGGCGGTACACTGTTCCTA
GACGAACTGTGTGAAATGGAACTTGAGATGCAGAAAAAACTTCTACGTTTTCTGCAAACAGGAACCTACACCCCGCTTGG
TGGCACCAAGGAAATGAAGGTGGATGTTCGGATTATCTGTGCAACCAACCGAGATCCATTGACCGAAGTGGAAGAAGGAC
GTTTCCGCGAAGACTTATACTATCGTGTGCACGTTGTTCCAATCGATATGCCGCCACTTCGCGAACGTGGTAGTGACATT
GTCACACTTGCTAAGCATTTCTTAACCACATACGCGAAGCAGGATAAGAAGAAGTTCAGCAATATCGACAGCGAAGCCCA
ACATGTGATTAAGCACTATGACTGGCCAGGCAATGTGCGTCAGTTGCAAAACATCATTCGCAACATTGTCGTGTTGAATG
ACGATGATAAAGTGACGCTGGCACACCTACCCGCTCAACTGACTCGCAAGCCGTCGAAAGCACGCACTGTCACTCCACCT
CATGTTGAAAGTGCTCAAGTAGCCGCGATAAATCCAGTCTCCACTACAACGCCAATGCAAGCACAACCATTAGAAAGTGC
GCCTGTAGAAACATCTGCGCAACCGGAGTTCTCCTCAACTATGGTTACGAACGAAGCGCCTCCAGCAAGCCCTGCGGCGC
AAGTGTCATCACCTTACTTCAATTCCGATGGCACCATCCGTCCAATGTGGAAAGTTGAGCGAGAGGCGATTCAAAACGCC
ATTGCGTATTGTGATGGTAACGTGCTTAACGCAGCGGTGATGTTGGAGCTTAGCCCTTCCACTGTGTATCGCAAAAAACA
AGCGTGGGAAGCGGATGAAGCTAATCTCGAACAATCTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Bacterial regulatory protein, Fis family (HTH_8)

(469-505)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A812FZJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.603

97.11

0.482

Multiple sequence alignment