Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   KJB05_RS03570 Genome accession   NZ_HG992742
Coordinates   751030..751647 (-) Length   205 a.a.
NCBI ID   WP_009707563.1    Uniprot ID   -
Organism   Vibrio sp. B1ASS3     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 746030..756647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJB05_RS03560 (ACOMICROBIO_LOCUS468) aceF 747138..749039 (+) 1902 WP_208445171.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  KJB05_RS03565 (ACOMICROBIO_LOCUS469) lpdA 749283..750713 (+) 1431 WP_005438019.1 dihydrolipoyl dehydrogenase -
  KJB05_RS03570 (ACOMICROBIO_LOCUS470) opaR 751030..751647 (-) 618 WP_009707563.1 transcriptional regulator OpaR Regulator
  KJB05_RS03575 (ACOMICROBIO_LOCUS471) hpt 751968..752498 (+) 531 WP_005439354.1 hypoxanthine phosphoribosyltransferase -
  KJB05_RS03580 (ACOMICROBIO_LOCUS472) can 752587..753255 (-) 669 WP_005439355.1 carbonate dehydratase -
  KJB05_RS03585 (ACOMICROBIO_LOCUS473) - 753539..755209 (+) 1671 WP_020196604.1 SulP family inorganic anion transporter -
  KJB05_RS03590 (ACOMICROBIO_LOCUS474) - 755446..756363 (+) 918 WP_005439357.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23710.99 Da        Isoelectric Point: 6.2211

>NTDB_id=1112391 KJB05_RS03570 WP_009707563.1 751030..751647(-) (opaR) [Vibrio sp. B1ASS3]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHEPE
HLANLFHGICYSIFVQANRSKSEAELSTLVSAYLDMLCIYNREHH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=1112391 KJB05_RS03570 WP_009707563.1 751030..751647(-) (opaR) [Vibrio sp. B1ASS3]
ATGGACTCAATAGCAAAGAGACCTCGTACTAGGCTTTCCCCTCTAAAACGTAAACAGCAACTGATGGAAATCGCTCTTGA
AGTATTTGCTCGTCGCGGCATTGGTCGTGGTGGTCACGCAGATATTGCAGAGATCGCTCAAGTTTCTGTTGCGACAGTAT
TTAACTACTTCCCTACTCGTGAAGACTTAGTGGATGAAGTTCTGAACCACGTTGTTCGTCAATTCTCGAACTTCTTGTCT
GATAACATCGACTTAGACATCCATGCACGCGAGAACATCGCCAACATCACTAATGCAATGATTGAGCTAGTAAGCCAAGA
TTGCCATTGGCTGAAAGTTTGGTTTGAGTGGAGCGCATCGACACGTGATGAAGTATGGCCGTTGTTCGTGACCACAAACC
GCACAAACCAACTATTGGTGCAAAACATGTTCATAAAAGCGATCGAACGTGGTGAAGTTTGTGACCAACATGAACCGGAA
CACTTGGCGAATCTGTTCCACGGTATTTGCTACTCTATTTTCGTACAAGCGAACCGCTCTAAGAGCGAAGCTGAGCTATC
AACGCTCGTTAGCGCTTACCTAGATATGCTGTGCATCTACAACCGTGAACATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

96.078

99.512

0.956
  hapR Vibrio cholerae C6706

71.717

96.585

0.693
  hapR Vibrio cholerae strain A1552

71.717

96.585

0.693

Multiple sequence alignment