Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   SEB_RS03375 Genome accession   NZ_HG813242
Coordinates   703363..703938 (+) Length   191 a.a.
NCBI ID   WP_001829272.1    Uniprot ID   -
Organism   Staphylococcus epidermidis PM221     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 698363..708938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SEB_RS03350 (SEB_00703) - 699260..700765 (+) 1506 WP_001829277.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  SEB_RS03355 (SEB_00704) - 700868..701470 (-) 603 WP_001829312.1 CPBP family glutamic-type intramembrane protease -
  SEB_RS03360 (SEB_00705) - 701476..701661 (-) 186 WP_001829339.1 DUF2187 family protein -
  SEB_RS03365 (SEB_00706) - 701866..702852 (+) 987 WP_001829269.1 lipoate--protein ligase -
  SEB_RS03370 (SEB_00707) - 702930..703148 (-) 219 WP_001829292.1 IDEAL domain-containing protein -
  SEB_RS03375 (SEB_00708) comK/comK1 703363..703938 (+) 576 WP_001829272.1 competence protein ComK Regulator
  SEB_RS13705 mobV 704997..705536 (+) 540 Protein_687 MobV family relaxase -
  SEB_RS03395 (SEB_00711) - 705738..705974 (+) 237 WP_001829451.1 hypothetical protein -
  SEB_RS03400 (SEB_00712) - 706187..706528 (+) 342 WP_002456621.1 fatty acid desaturase -
  SEB_RS03405 (SEB_00714) - 706672..707148 (+) 477 WP_228447555.1 LysE family transporter -
  SEB_RS03410 (SEB_00715) - 707218..707376 (-) 159 WP_001829449.1 hypothetical protein -
  SEB_RS03415 (SEB_00716) - 708027..708242 (-) 216 WP_001831694.1 NINE protein -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22782.87 Da        Isoelectric Point: 9.2887

>NTDB_id=1112028 SEB_RS03375 WP_001829272.1 703363..703938(+) (comK/comK1) [Staphylococcus epidermidis PM221]
MTHLPETIYVIRKGDMVIRPKYDEYQQTNGTEIIRFDQTRKESPFKVQRIIERSCKFYGNNYISKKAETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQEENIWINMHYIENVKELKNRKSKIIFANGDSLTLNVSFHSLWHQYTNAIIYYYMVDKQSRM
KSNNPEQPIDYNQSSLNIFEALSRYSLFEEN

Nucleotide


Download         Length: 576 bp        

>NTDB_id=1112028 SEB_RS03375 WP_001829272.1 703363..703938(+) (comK/comK1) [Staphylococcus epidermidis PM221]
ATGACACATTTACCCGAAACGATTTATGTTATACGAAAAGGTGATATGGTAATACGACCTAAATATGATGAATATCAGCA
AACAAATGGTACTGAAATTATCAGATTTGATCAAACTCGCAAAGAAAGTCCATTTAAAGTACAGAGAATTATCGAAAGAT
CATGTAAATTTTATGGTAATAATTATATTAGTAAAAAAGCAGAAACGAATCGTATTACTGGAATCTCTAGTAAACCACCT
ATTTTACTTACGCCTCTTTTTCCTACTTACTTTTTTCCAACTCACTCAGACCGTCAAGAAGAAAATATATGGATTAATAT
GCATTATATTGAAAATGTTAAAGAACTTAAAAATCGTAAGAGTAAAATAATTTTTGCGAATGGTGATTCGTTAACGCTCA
ATGTATCATTTCATAGCTTGTGGCATCAATATACGAATGCAATCATCTATTATTACATGGTAGATAAGCAATCACGAATG
AAATCTAACAACCCTGAACAACCCATTGACTATAATCAGTCTTCTCTAAATATTTTCGAGGCGCTCTCACGCTACTCCCT
TTTTGAAGAAAATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(7-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

76.757

96.859

0.743
  comK/comK1 Staphylococcus aureus N315

76.757

96.859

0.743

Multiple sequence alignment