Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   RBI_RS05460 Genome accession   NZ_HF545616
Coordinates   1197395..1199152 (+) Length   585 a.a.
NCBI ID   WP_038671602.1    Uniprot ID   -
Organism   Ruminococcus bicirculans (ex Wegman et al. 2014) strain 80/3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1192395..1204152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI_RS05430 (RBI_I01061) - 1193041..1193703 (-) 663 WP_051706495.1 lytic transglycosylase domain-containing protein -
  RBI_RS05435 (RBI_I01062) coaE 1193693..1194295 (-) 603 WP_038671598.1 dephospho-CoA kinase -
  RBI_RS05440 (RBI_I01063) - 1194292..1195311 (-) 1020 WP_038671600.1 L-threonylcarbamoyladenylate synthase -
  RBI_RS05445 (RBI_I01064) prfA 1195314..1196393 (-) 1080 WP_022287284.1 peptide chain release factor 1 -
  RBI_RS05450 (RBI_I01065) - 1196462..1196650 (-) 189 WP_022287283.1 DUF951 domain-containing protein -
  RBI_RS05455 (RBI_I01066) - 1196924..1197379 (+) 456 WP_051706497.1 MarR family winged helix-turn-helix transcriptional regulator -
  RBI_RS05460 (RBI_I01067) rcrP 1197395..1199152 (+) 1758 WP_038671602.1 ABC transporter ATP-binding protein Regulator
  RBI_RS05465 (RBI_I01068) rcrQ 1199169..1200947 (+) 1779 WP_038671604.1 ABC transporter ATP-binding protein Regulator
  RBI_RS05470 (RBI_I01069) - 1201177..1202451 (+) 1275 WP_038671606.1 diaminopimelate decarboxylase -
  RBI_RS05475 (RBI_I01070) gatC 1202650..1202928 (+) 279 WP_038671608.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64891.71 Da        Isoelectric Point: 5.6037

>NTDB_id=1111776 RBI_RS05460 WP_038671602.1 1197395..1199152(+) (rcrP) [Ruminococcus bicirculans (ex Wegman et al. 2014) strain 80/3]
MIKLLKKMGKREVLMAVLCALLVLGQVYFDLTLPDYMTDLTMMLNTAGSETSDILNVGLKMLGCTLASAALAIVCGYLSA
KTASGFSYTIREKLFNHVMDMGSEEMQDFSIPSLITRTTNDITQIQMIVSMGLQMIIKSPIMAVWAVIKILGKSWELSAV
TAAFVVVICVFVLAVMATCIPRFRIVQKLTDKINRVARENLTGINVVHAFNAEKYQNDKFDVPSKDMMNTQLKNQRMFAL
MMPVMNIGMNGLTLAIYWLGAVLIQQIALTAVQDRITFFSNVVVFSTYATYVVMSFMMLVMIFMMLPAAQVSAERINEVL
ERDVNIKEGSVSEGREQGTVEFKNVSFRYPHASEDELSNISFKIEKGQTLAIIGATGSGKTTLISLIPRFYDATEGEVLV
DGVNVKNYKFDTLYDKLGYVTQKAVLFAGSIRENVFFGESAAPESDEELKNAIELSQAEEFVDKLPDGTEHMISQMGRNV
SGGQKQRLSISRALSRKPEILVFDDSFSALDYKTDAKLREGLNEKLGDTTKIIVAQRISTIRHADKIIVLDRGEAVGMGT
HEELMKNCDVYKEIALSQLSAAELA

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=1111776 RBI_RS05460 WP_038671602.1 1197395..1199152(+) (rcrP) [Ruminococcus bicirculans (ex Wegman et al. 2014) strain 80/3]
ATGATAAAACTGCTTAAAAAGATGGGCAAGCGTGAGGTGCTTATGGCTGTTCTCTGTGCACTTCTGGTGCTGGGACAGGT
GTATTTTGACCTGACGCTGCCTGACTATATGACTGACCTGACCATGATGCTCAACACGGCAGGCAGTGAAACTTCCGATA
TCCTGAACGTCGGACTTAAAATGCTTGGCTGTACCCTTGCAAGTGCCGCTCTTGCTATCGTCTGCGGCTATCTTTCCGCA
AAGACTGCCTCAGGATTCAGCTACACAATAAGAGAAAAGCTGTTCAACCATGTTATGGATATGGGCAGCGAGGAGATGCA
GGACTTTTCCATACCGAGCCTTATAACAAGGACAACAAACGACATCACACAGATACAGATGATAGTGTCAATGGGACTTC
AGATGATAATAAAATCTCCTATCATGGCAGTGTGGGCTGTTATAAAGATACTTGGCAAGAGCTGGGAGCTTTCAGCGGTG
ACTGCGGCGTTCGTTGTGGTGATATGCGTATTCGTTCTTGCAGTTATGGCGACCTGCATACCGAGATTCCGTATCGTTCA
GAAGCTAACTGATAAAATAAACCGTGTGGCAAGAGAAAATCTCACAGGCATAAACGTTGTCCATGCTTTCAATGCTGAGA
AATATCAGAACGACAAGTTCGATGTTCCAAGCAAGGATATGATGAACACACAGCTTAAAAACCAGAGAATGTTCGCACTT
ATGATGCCAGTTATGAATATCGGAATGAATGGTCTGACCCTTGCTATCTACTGGCTTGGTGCAGTACTTATCCAGCAGAT
AGCCCTGACGGCTGTTCAGGACAGGATAACGTTTTTCAGCAACGTTGTTGTTTTCAGCACATATGCCACATACGTTGTAA
TGTCATTTATGATGCTCGTTATGATATTCATGATGCTCCCTGCGGCTCAGGTATCAGCAGAGCGTATCAACGAAGTGCTT
GAGCGTGACGTGAACATAAAAGAGGGCAGCGTCAGCGAGGGAAGAGAGCAGGGTACTGTGGAATTTAAAAACGTTTCTTT
CAGATATCCTCATGCCTCTGAGGACGAGCTGAGCAACATAAGTTTCAAGATAGAAAAGGGTCAGACCCTTGCCATAATCG
GTGCAACAGGAAGCGGCAAGACAACGCTTATAAGCCTTATACCAAGATTTTATGACGCAACAGAGGGCGAAGTCCTTGTG
GACGGCGTAAACGTAAAAAACTATAAGTTCGACACCCTTTATGACAAGCTTGGATATGTCACGCAAAAGGCTGTGCTTTT
TGCAGGCAGTATAAGAGAAAACGTATTTTTCGGCGAGAGTGCCGCTCCTGAAAGTGACGAGGAGCTAAAAAACGCTATCG
AGCTTTCTCAGGCGGAGGAGTTTGTGGATAAGCTTCCTGACGGCACAGAGCATATGATATCTCAAATGGGCAGAAACGTT
TCAGGCGGACAGAAGCAGCGTTTGTCTATTTCGAGAGCGCTTTCAAGAAAGCCTGAGATACTTGTATTTGATGATTCTTT
CTCAGCCCTTGATTACAAGACAGACGCAAAGCTCAGAGAGGGTCTTAACGAGAAGCTTGGGGATACAACAAAGATAATCG
TTGCGCAGAGAATAAGCACTATCCGTCATGCAGACAAGATAATAGTCCTTGACCGTGGCGAAGCCGTGGGCATGGGAACT
CATGAGGAGCTTATGAAAAACTGCGACGTATACAAAGAGATAGCACTTTCACAGCTAAGTGCGGCAGAGCTTGCATAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(34-285)

ABC transporter (ABC_tran)

(357-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

49.161

100

0.501

Multiple sequence alignment