Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RBI_RS05465 Genome accession   NZ_HF545616
Coordinates   1199169..1200947 (+) Length   592 a.a.
NCBI ID   WP_038671604.1    Uniprot ID   -
Organism   Ruminococcus bicirculans (ex Wegman et al. 2014) strain 80/3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1194169..1205947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI_RS05440 (RBI_I01063) - 1194292..1195311 (-) 1020 WP_038671600.1 L-threonylcarbamoyladenylate synthase -
  RBI_RS05445 (RBI_I01064) prfA 1195314..1196393 (-) 1080 WP_022287284.1 peptide chain release factor 1 -
  RBI_RS05450 (RBI_I01065) - 1196462..1196650 (-) 189 WP_022287283.1 DUF951 domain-containing protein -
  RBI_RS05455 (RBI_I01066) - 1196924..1197379 (+) 456 WP_051706497.1 MarR family winged helix-turn-helix transcriptional regulator -
  RBI_RS05460 (RBI_I01067) rcrP 1197395..1199152 (+) 1758 WP_038671602.1 ABC transporter ATP-binding protein Regulator
  RBI_RS05465 (RBI_I01068) rcrQ 1199169..1200947 (+) 1779 WP_038671604.1 ABC transporter ATP-binding protein Regulator
  RBI_RS05470 (RBI_I01069) - 1201177..1202451 (+) 1275 WP_038671606.1 diaminopimelate decarboxylase -
  RBI_RS05475 (RBI_I01070) gatC 1202650..1202928 (+) 279 WP_038671608.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  RBI_RS05480 (RBI_I01071) gatA 1202969..1204402 (+) 1434 WP_148303576.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 65111.46 Da        Isoelectric Point: 6.1957

>NTDB_id=1111777 RBI_RS05465 WP_038671604.1 1199169..1200947(+) (rcrQ) [Ruminococcus bicirculans (ex Wegman et al. 2014) strain 80/3]
MRKYEKSSKGEMASAMKKIIEYMKGSVGIVAVALVLAALGAVLTIIGPDKVGEITDLIADGLMTGIDLKAVARVGIFLGA
IYISSSLFTFIQQYIMATVTLKMSYRMRSDLSRKINCVPQKYFNSHSQGDILSRITNDVSTLQQGLTNSLPTIISAAAQF
VGCLIMMFVTEWRLALISLFITFLGLFLIVFIMSKSQKFFLDRQESLGKLNGYVEEMYSGHEVVRISRGADNVKEHFGGL
NEAVYNANWKSQFLSGMMQPLMNVIGNIAYVAVCVFGSVLALNGTIKFGVIISFILYVRLFTSPLGQIAQGMTNMQTASA
SAQRIFDFIESEELSDESDKSSEVPEVKGNVSFENVRFSYPDTPDKVIIKNFSAEVKAGQKVAIVGPTGAGKTTMVNLLM
RFFEINSGSISIDGTPISQLSRETVHNMFSMVLQDTWLFEGTVRENLVYNMEGISDESLERVCKACGLDKFVHTLPEGFD
TVLSESVAISAGQKQLLTIARAMLQNAPMLILDEATSSVDTRTELLIQRAMDKLTKGRTSFVIAHRLSTIKNADLILVMR
DGDVIESGNHETLMAKGGFYAELYNSQFDQAS

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=1111777 RBI_RS05465 WP_038671604.1 1199169..1200947(+) (rcrQ) [Ruminococcus bicirculans (ex Wegman et al. 2014) strain 80/3]
ATGAGAAAATACGAAAAGTCTAGTAAGGGCGAAATGGCGTCCGCTATGAAAAAAATAATAGAGTATATGAAAGGCAGTGT
AGGTATCGTTGCCGTGGCATTGGTTCTTGCGGCGCTTGGTGCGGTGCTGACTATCATAGGGCCTGACAAGGTGGGCGAGA
TAACCGACCTTATAGCAGACGGACTTATGACAGGCATTGACCTTAAAGCGGTGGCAAGGGTAGGAATATTCCTTGGAGCG
ATATATATTTCAAGCTCGCTTTTTACCTTTATTCAGCAGTATATAATGGCAACTGTCACGCTGAAAATGTCATACAGAAT
GAGAAGCGACCTTTCAAGGAAGATAAACTGCGTTCCTCAGAAGTATTTCAACTCACATTCACAGGGCGATATACTCAGCC
GTATCACAAATGATGTATCAACGTTACAACAGGGTCTTACAAACAGTCTTCCGACCATAATCAGTGCAGCGGCACAGTTT
GTGGGCTGTCTTATAATGATGTTCGTTACAGAATGGCGACTTGCACTCATCTCACTGTTCATCACATTCTTGGGACTTTT
CCTGATAGTTTTCATAATGTCAAAATCACAGAAGTTCTTCCTCGACAGACAGGAAAGCCTTGGTAAGCTCAACGGCTATG
TTGAGGAGATGTATTCAGGTCACGAGGTAGTAAGGATATCCCGTGGAGCAGATAATGTAAAGGAACATTTTGGTGGACTT
AACGAGGCGGTATACAACGCAAACTGGAAGTCACAGTTTCTTTCAGGCATGATGCAGCCGCTTATGAACGTTATCGGAAA
TATTGCATACGTTGCAGTATGCGTGTTCGGCTCAGTGCTTGCACTTAACGGCACTATAAAGTTCGGCGTTATAATCTCAT
TTATACTTTATGTAAGACTTTTCACATCTCCTCTTGGTCAGATAGCTCAGGGCATGACAAATATGCAGACAGCTTCCGCC
TCGGCTCAGAGAATATTTGACTTTATCGAAAGCGAGGAACTTTCAGACGAGAGCGACAAGAGCAGTGAAGTCCCTGAGGT
AAAGGGCAATGTAAGCTTTGAAAATGTTCGTTTCAGCTATCCTGATACTCCTGACAAGGTGATAATAAAGAACTTCTCCG
CAGAGGTAAAGGCAGGTCAGAAGGTGGCTATCGTCGGACCTACCGGTGCAGGTAAGACCACAATGGTAAATCTGCTTATG
AGATTTTTCGAGATAAATAGTGGAAGTATCTCCATAGACGGCACGCCTATATCACAGCTCAGCCGTGAAACGGTGCACAA
TATGTTCAGCATGGTTTTGCAGGACACATGGCTTTTTGAGGGCACTGTGAGAGAAAACCTTGTTTACAACATGGAAGGCA
TAAGCGACGAGTCCCTTGAAAGAGTGTGCAAAGCCTGCGGTCTGGATAAGTTCGTTCATACGCTCCCTGAGGGCTTTGAT
ACAGTGCTTTCTGAAAGCGTGGCAATATCCGCAGGACAGAAACAGCTTCTCACTATCGCAAGAGCAATGCTCCAGAATGC
GCCTATGCTCATACTTGATGAAGCAACATCTTCTGTCGATACGAGAACGGAGCTTCTTATCCAAAGGGCAATGGATAAGC
TTACAAAGGGCAGAACGAGCTTTGTTATCGCACACAGACTTTCGACTATCAAAAACGCAGACCTGATACTTGTTATGCGT
GACGGCGACGTTATCGAAAGCGGAAACCATGAAACCCTTATGGCAAAGGGTGGATTTTATGCCGAGCTTTATAACAGCCA
GTTCGATCAGGCTTCATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(370-517)

ABC transporter transmembrane region (ABC_membrane)

(31-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.166

97.466

0.508

Multiple sequence alignment