Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   HMPREF9425_RS06980 Genome accession   NZ_GL831112
Coordinates   1450023..1451828 (-) Length   601 a.a.
NCBI ID   WP_003097758.1    Uniprot ID   -
Organism   Streptococcus vestibularis ATCC 49124     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1445023..1456828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9425_RS06965 (HMPREF9425_1457) - 1446603..1447745 (-) 1143 WP_003095651.1 peptidyl-prolyl cis-trans isomerase -
  HMPREF9425_RS06970 (HMPREF9425_1458) - 1447807..1448514 (-) 708 WP_003097755.1 O-methyltransferase -
  HMPREF9425_RS06975 (HMPREF9425_1459) - 1448572..1449807 (-) 1236 WP_037621559.1 L-lactate MFS transporter -
  HMPREF9425_RS06980 (HMPREF9425_1460) pepF 1450023..1451828 (-) 1806 WP_003097758.1 oligoendopeptidase F Regulator
  HMPREF9425_RS06985 (HMPREF9425_1461) - 1451839..1452798 (-) 960 WP_003097764.1 competence protein CoiA -
  HMPREF9425_RS06995 (HMPREF9425_1462) - 1454113..1454796 (+) 684 WP_037621563.1 LysR family transcriptional regulator -
  HMPREF9425_RS10395 (HMPREF9425_1463) - 1454847..1455075 (+) 229 Protein_1427 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69026.14 Da        Isoelectric Point: 4.6024

>NTDB_id=1111757 HMPREF9425_RS06980 WP_003097758.1 1450023..1451828(-) (pepF) [Streptococcus vestibularis ATCC 49124]
MSDNRTHLDEKYTWDLTTIFATDADWETEYESTVQDLKKVSAYAGHLLDSAKNLLEATELYMSLMRRLEKIYVYASMKND
QDTTVGLYQEYQAKASNLYSQLSGAFAYFEPEFMALDAKKLAEFKEQEPGLGLYDHYFERLLANKDHVLSQEAEELLAAA
GDIFNGPTDTFNVLDNADILFPWVSDGQGDVIELTHGNFITLMESKDRDIRKGAYEAMYGTYEQFQHTYAQTLQGVVKVH
NYQAKVRHYNSARHAALAANFIPESVYDSLLESVNKHLPLLHRYLDLRKKVLGLDELKMYDVYTPLSETETALTYEESLK
KAEEVLAIFGEEYSKGVHAAFTERWIDVHPNKGKRSGAYSGGAYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTRQT
QPYVYGDYPIFLAEIASTTNENILTETLLKEVKDDKTRFAILNHYLDGFKGTVFRQTQFAEFEHAIHEADASGQILTAEF
MNKIYADLNEKYYNLKAEDNYEIQFEWERIPHFYMNYYVYQYATGFAAASYLAEKIVHGTEEDKEAYLTYLKAGSSDYPL
EVIKKAGVDMTNTDYLDAAFKVFEDRLVELETLVEKGVHLS

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=1111757 HMPREF9425_RS06980 WP_003097758.1 1450023..1451828(-) (pepF) [Streptococcus vestibularis ATCC 49124]
ATGTCAGACAATCGTACTCATTTAGACGAGAAATACACATGGGATTTGACGACCATTTTTGCGACAGATGCAGATTGGGA
AACTGAATATGAAAGCACTGTTCAGGATTTGAAGAAGGTTAGTGCTTATGCAGGTCATCTCTTGGATTCTGCTAAGAACT
TGCTTGAGGCAACAGAACTTTATATGAGCCTTATGCGTCGTTTGGAGAAAATATACGTTTATGCGTCAATGAAAAATGAC
CAAGATACAACGGTAGGTCTTTACCAAGAATACCAAGCCAAAGCCTCAAACCTTTACTCACAGTTGAGTGGAGCCTTTGC
TTACTTTGAGCCTGAATTTATGGCCTTGGATGCTAAGAAATTAGCTGAATTTAAAGAACAAGAGCCAGGTCTTGGGCTTT
ATGACCACTATTTCGAACGTCTTTTGGCAAACAAGGACCACGTTCTTTCTCAAGAAGCAGAAGAACTCTTGGCAGCAGCT
GGTGATATTTTCAATGGTCCAACGGATACCTTCAACGTCTTGGATAATGCTGATATCCTCTTCCCATGGGTATCGGATGG
TCAAGGGGATGTGATTGAGTTGACACATGGTAATTTTATCACCCTCATGGAATCTAAGGACCGTGACATTCGTAAGGGAG
CTTATGAAGCGATGTACGGTACTTACGAGCAGTTCCAACATACCTATGCACAAACACTCCAAGGTGTTGTTAAGGTTCAC
AATTACCAAGCCAAAGTTCGTCACTATAATTCGGCACGTCATGCAGCACTTGCGGCTAACTTTATTCCAGAAAGTGTTTA
TGACTCTCTCTTGGAATCAGTGAACAAGCATTTGCCACTTTTGCACCGTTACCTTGATTTGCGTAAGAAGGTCTTGGGGC
TTGACGAGCTTAAGATGTATGACGTTTATACACCACTTTCTGAGACTGAAACTGCTCTTACTTATGAAGAATCCCTCAAG
AAAGCAGAAGAAGTCTTGGCAATCTTTGGTGAAGAGTATAGTAAAGGGGTTCATGCAGCCTTTACGGAACGTTGGATTGA
CGTTCACCCTAACAAAGGAAAACGTTCAGGGGCCTACTCAGGTGGTGCCTATGATACCAATGCTTTCATGCTTTTGAACT
GGCAAGACACTTTGGACAATCTCTTTACCTTGGTTCACGAGACTGGCCACAGTTTGCATTCAACTTTTACACGTCAGACT
CAACCATATGTTTACGGAGATTACCCAATTTTCTTGGCGGAAATTGCGTCTACAACCAATGAGAATATCTTGACGGAAAC
GCTTCTTAAAGAAGTTAAAGATGACAAGACACGTTTTGCTATTCTTAATCACTATTTGGATGGTTTCAAGGGAACTGTCT
TCCGTCAAACACAATTTGCTGAGTTTGAACATGCTATTCATGAAGCAGATGCATCTGGTCAAATCTTGACAGCAGAATTC
ATGAATAAGATTTATGCAGACCTCAATGAGAAATACTACAACCTTAAAGCTGAAGATAACTACGAAATTCAGTTTGAGTG
GGAACGTATTCCGCATTTCTACATGAATTACTATGTCTACCAATACGCTACAGGGTTTGCAGCAGCAAGCTACTTGGCTG
AAAAAATTGTTCACGGTACTGAGGAGGATAAAGAAGCTTACCTTACTTACCTTAAGGCGGGAAGCTCAGATTATCCTTTG
GAAGTTATCAAGAAAGCTGGTGTTGATATGACCAATACCGACTACTTGGATGCTGCCTTCAAAGTTTTTGAAGACCGTCT
CGTTGAATTGGAAACCTTGGTTGAAAAAGGTGTTCACCTTTCTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

98.502

100

0.985

Multiple sequence alignment