Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   HMPREF9425_RS06435 Genome accession   NZ_GL831112
Coordinates   1310225..1311451 (-) Length   408 a.a.
NCBI ID   WP_003097621.1    Uniprot ID   -
Organism   Streptococcus vestibularis ATCC 49124     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1305225..1316451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9425_RS06405 (HMPREF9425_1340) plsY 1305599..1306240 (+) 642 WP_003093288.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  HMPREF9425_RS06410 (HMPREF9425_1341) - 1306357..1306707 (-) 351 WP_003093314.1 helix-hairpin-helix domain-containing protein -
  HMPREF9425_RS06415 (HMPREF9425_1342) - 1306782..1307036 (-) 255 WP_003094650.1 DUF1912 family protein -
  HMPREF9425_RS06420 (HMPREF9425_1343) mmuM 1307149..1308099 (-) 951 WP_003094879.1 homocysteine S-methyltransferase -
  HMPREF9425_RS06425 (HMPREF9425_1344) - 1308111..1309487 (-) 1377 WP_003097618.1 amino acid permease -
  HMPREF9425_RS06430 (HMPREF9425_1345) yihA 1309617..1310215 (-) 599 Protein_1313 ribosome biogenesis GTP-binding protein YihA/YsxC -
  HMPREF9425_RS06435 (HMPREF9425_1346) clpX 1310225..1311451 (-) 1227 WP_003097621.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  HMPREF9425_RS09810 (HMPREF9425_1347) - 1311469..1311639 (-) 171 WP_002886174.1 hypothetical protein -
  HMPREF9425_RS06445 (HMPREF9425_1348) - 1311644..1312147 (-) 504 WP_003093756.1 dihydrofolate reductase -
  HMPREF9425_RS06450 (HMPREF9425_1349) - 1312255..1313115 (-) 861 WP_003093490.1 thymidylate synthase -
  HMPREF9425_RS06455 (HMPREF9425_1350) - 1313438..1314613 (+) 1176 WP_037621539.1 hydroxymethylglutaryl-CoA synthase -
  HMPREF9425_RS06460 (HMPREF9425_1351) - 1314606..1315877 (+) 1272 WP_003097627.1 hydroxymethylglutaryl-CoA reductase, degradative -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45009.33 Da        Isoelectric Point: 4.3489

>NTDB_id=1111755 HMPREF9425_RS06435 WP_003097621.1 1310225..1311451(-) (clpX) [Streptococcus vestibularis ATCC 49124]
MAGNRNEEMVYCSFCGKNQEEVKKIIAGNGVFICNECVALSQEIIREEMAEEVLADLAETPKPKELLDILNNYVVGQDRA
KRALSVAVYNHYKRINFTESREDNDVDLQKSNILMIGPTGSGKTFLAQTLARSLNVPFAIADATSLTEAGYVGEDVENIL
LKLIQAADFNIERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTKN
ILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKAIDDDSSYMQEIVAEDIQKFGLIPEFIGRLPVLAALEQLTVDDLVRIL
TEPRNALVKQYQTLLSYDGVELEFDQDALEAIASKAIERKTGARGLRSIIEEVMMDVMFEIPSQEDVTKVRITKEAVDGT
AAPVLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1111755 HMPREF9425_RS06435 WP_003097621.1 1310225..1311451(-) (clpX) [Streptococcus vestibularis ATCC 49124]
ATGGCTGGAAATCGTAATGAAGAAATGGTTTATTGTTCATTTTGTGGCAAAAACCAAGAAGAAGTAAAGAAAATTATCGC
TGGGAATGGCGTCTTTATCTGTAACGAATGTGTGGCCTTGTCACAAGAAATCATTCGTGAGGAAATGGCAGAAGAAGTTT
TGGCTGACTTGGCTGAAACACCAAAGCCAAAAGAACTTTTAGATATTTTAAACAACTATGTCGTGGGGCAGGACCGTGCC
AAACGTGCCTTGTCGGTAGCTGTTTACAATCACTATAAACGTATCAATTTCACAGAAAGTCGTGAAGACAATGATGTGGA
TTTGCAAAAATCAAATATTCTCATGATTGGACCAACTGGTTCAGGGAAGACTTTCTTGGCTCAGACCTTGGCTCGTAGCT
TGAATGTTCCATTTGCGATTGCGGATGCAACATCATTGACAGAGGCAGGTTATGTGGGTGAGGATGTGGAAAATATCCTC
CTCAAACTGATCCAAGCGGCAGACTTCAATATTGAACGTGCGGAACGTGGGATCATCTATGTCGATGAGATTGATAAGAT
TGCTAAAAAGGGTGAAAACGTATCAATCACTCGTGACGTTTCAGGTGAAGGGGTTCAACAAGCTCTCTTGAAGATTATCG
AAGGAACAGTAGCCAGCGTTCCCCCTCAAGGTGGTCGTAAACACCCTAACCAAGAGATGATTCAAATTGATACTAAGAAT
ATTCTCTTTATCGTGGGTGGTGCTTTTGATGGTATCGAAGATATCGTTAAGCAACGTCTTGGTGAGAAAATCATTGGTTT
TGGTCAAAATAATAAGGCAATTGATGATGACTCATCATACATGCAAGAAATTGTGGCTGAAGATATCCAAAAATTTGGTC
TTATCCCTGAGTTTATCGGACGTTTGCCAGTCCTTGCGGCCCTAGAACAGTTAACGGTTGACGACTTGGTTCGTATCTTG
ACAGAGCCTAGAAATGCCTTGGTTAAACAGTATCAAACCCTCTTGTCTTATGATGGGGTTGAACTGGAGTTTGACCAAGA
TGCTCTTGAAGCTATTGCAAGTAAGGCGATTGAACGTAAGACTGGTGCTCGTGGGCTTCGCTCTATCATTGAGGAAGTCA
TGATGGATGTCATGTTTGAAATCCCTAGTCAGGAAGATGTGACTAAGGTTCGTATTACCAAAGAAGCCGTTGATGGTACA
GCTGCTCCAGTTTTGGAAACAGCGTAA

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

89.731

100

0.9
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.855

98.284

0.569

Multiple sequence alignment