Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   ACMCNG_RS02085 Genome accession   NZ_AP038785
Coordinates   458915..459619 (+) Length   234 a.a.
NCBI ID   WP_226692716.1    Uniprot ID   -
Organism   Rodentibacter sp. THUN1654     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 453915..464619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMCNG_RS02060 (THUN1654_03950) fecD 454401..455336 (-) 936 WP_374707306.1 Fe(3+) dicitrate ABC transporter permease subunit FecD -
  ACMCNG_RS02065 (THUN1654_03960) fecC 455381..456373 (-) 993 WP_226692712.1 iron-dicitrate ABC transporter permease FecC -
  ACMCNG_RS02070 (THUN1654_03970) - 456373..457266 (-) 894 WP_226692713.1 Fe(3+) dicitrate ABC transporter substrate-binding protein -
  ACMCNG_RS02075 (THUN1654_03980) suhB 457393..458196 (-) 804 WP_226692714.1 inositol-1-monophosphatase -
  ACMCNG_RS02080 (THUN1654_03990) comN 458395..458910 (+) 516 WP_226692715.1 type II secretion system protein Machinery gene
  ACMCNG_RS02085 (THUN1654_04000) comO 458915..459619 (+) 705 WP_226692716.1 type II secretion system protein J Machinery gene
  ACMCNG_RS02090 (THUN1654_04010) comP 459616..460299 (+) 684 WP_226692981.1 DUF2572 family protein Machinery gene
  ACMCNG_RS02095 (THUN1654_04020) comQ 460304..460579 (+) 276 WP_226692717.1 DUF5374 domain-containing protein Machinery gene
  ACMCNG_RS02100 (THUN1654_04030) recC 460623..464021 (+) 3399 WP_226692718.1 exodeoxyribonuclease V subunit gamma -
  ACMCNG_RS02105 (THUN1654_04040) nrdR 464080..464529 (+) 450 WP_226692719.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26374.35 Da        Isoelectric Point: 7.9280

>NTDB_id=111172 ACMCNG_RS02085 WP_226692716.1 458915..459619(+) (comO) [Rodentibacter sp. THUN1654]
MLKGQTLLSLMISLAISAALLFVISQFYVDTQIQNQKIFLRLKLQAEIQRTIQLIGKDLRRAGFRALNDKLIESNLNLFE
LDEKGSALIISQANNAAQNSCVLFFYDLDANGCIGEKYTKNTCINGNQNVAKGIEKELFGYKLNGKMIETKQTYKNTIKV
NCQFGECQKALQQSACNAGGGWTDLLDEKEYEITHLQFNRFAEGKGIEIRLGGNLKNYPEIHYETAMVVALWNQ

Nucleotide


Download         Length: 705 bp        

>NTDB_id=111172 ACMCNG_RS02085 WP_226692716.1 458915..459619(+) (comO) [Rodentibacter sp. THUN1654]
ATGTTAAAAGGGCAAACTTTACTTAGCCTAATGATTTCATTGGCAATTTCTGCCGCACTTTTATTCGTGATTTCACAATT
TTATGTGGATACGCAAATTCAAAATCAGAAAATCTTTTTACGTTTAAAATTACAGGCGGAAATTCAACGTACGATCCAAC
TTATCGGCAAAGATCTGCGCCGTGCCGGTTTTCGGGCTCTCAACGATAAATTAATTGAAAGTAATCTGAATTTGTTTGAA
TTAGATGAAAAGGGAAGTGCTTTGATAATTTCTCAGGCGAATAATGCCGCTCAAAATAGCTGTGTTTTGTTCTTTTATGA
TCTTGATGCAAATGGTTGTATCGGTGAAAAATACACTAAAAATACTTGTATCAATGGCAATCAAAATGTCGCAAAAGGTA
TCGAAAAAGAACTTTTCGGTTATAAATTGAATGGCAAAATGATCGAAACCAAGCAAACCTATAAAAATACAATTAAGGTA
AATTGTCAATTCGGTGAATGTCAAAAAGCACTTCAACAAAGTGCCTGTAATGCCGGAGGTGGTTGGACGGATTTACTGGA
CGAAAAGGAATATGAAATTACCCATCTGCAATTTAATCGTTTCGCAGAAGGAAAAGGGATAGAAATTCGGCTCGGCGGTA
ATTTAAAAAATTATCCGGAGATTCACTATGAAACCGCTATGGTGGTGGCACTTTGGAATCAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

64.53

100

0.645

Multiple sequence alignment