Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   ACMCNG_RS02080 Genome accession   NZ_AP038785
Coordinates   458395..458910 (+) Length   171 a.a.
NCBI ID   WP_226692715.1    Uniprot ID   -
Organism   Rodentibacter sp. THUN1654     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 453395..463910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMCNG_RS02055 (THUN1654_03940) fecE 453634..454401 (-) 768 WP_226692710.1 Fe(3+) dicitrate ABC transporter ATP-binding protein FecE -
  ACMCNG_RS02060 (THUN1654_03950) fecD 454401..455336 (-) 936 WP_374707306.1 Fe(3+) dicitrate ABC transporter permease subunit FecD -
  ACMCNG_RS02065 (THUN1654_03960) fecC 455381..456373 (-) 993 WP_226692712.1 iron-dicitrate ABC transporter permease FecC -
  ACMCNG_RS02070 (THUN1654_03970) - 456373..457266 (-) 894 WP_226692713.1 Fe(3+) dicitrate ABC transporter substrate-binding protein -
  ACMCNG_RS02075 (THUN1654_03980) suhB 457393..458196 (-) 804 WP_226692714.1 inositol-1-monophosphatase -
  ACMCNG_RS02080 (THUN1654_03990) comN 458395..458910 (+) 516 WP_226692715.1 type II secretion system protein Machinery gene
  ACMCNG_RS02085 (THUN1654_04000) comO 458915..459619 (+) 705 WP_226692716.1 type II secretion system protein J Machinery gene
  ACMCNG_RS02090 (THUN1654_04010) comP 459616..460299 (+) 684 WP_226692981.1 DUF2572 family protein Machinery gene
  ACMCNG_RS02095 (THUN1654_04020) comQ 460304..460579 (+) 276 WP_226692717.1 DUF5374 domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19732.99 Da        Isoelectric Point: 8.9687

>NTDB_id=111171 ACMCNG_RS02080 WP_226692715.1 458395..458910(+) (comN) [Rodentibacter sp. THUN1654]
MRKGATLIELLIALAIISIALSFILPLWQRDDDKMILAKEQRRLYLFLRQIQARAENSSEIWFILANRNPATQQWCMTAQ
VKNDKLCDCLHSTNCPKEVYAHFYYPYFAEKTMIVSPKIYPVEVARFNGIRNTIDSNCFLLQAGEERTLFSFFNVGSLKL
KPNQSASACTR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=111171 ACMCNG_RS02080 WP_226692715.1 458395..458910(+) (comN) [Rodentibacter sp. THUN1654]
ATGCGGAAAGGGGCAACATTAATCGAATTATTAATTGCTTTGGCGATTATCAGTATTGCTTTGAGTTTTATCCTTCCCCT
TTGGCAAAGGGATGATGACAAAATGATTTTAGCGAAAGAGCAACGTCGTCTTTATTTATTCCTACGGCAAATTCAAGCGC
GGGCTGAAAATTCTTCTGAAATTTGGTTTATTTTGGCAAATCGTAACCCCGCAACACAGCAATGGTGTATGACCGCCCAA
GTGAAAAACGATAAACTTTGCGATTGCTTACATTCGACAAATTGCCCAAAGGAAGTTTACGCACATTTTTATTATCCTTA
CTTTGCGGAGAAAACGATGATTGTGAGCCCTAAAATTTACCCCGTGGAGGTTGCGCGTTTTAACGGCATCCGCAACACTA
TTGATTCCAACTGTTTTTTATTACAAGCAGGCGAGGAACGTACTCTTTTTTCTTTTTTTAATGTCGGTAGTTTGAAATTA
AAACCGAATCAATCTGCCAGTGCTTGTACGAGATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

72.781

98.83

0.719

Multiple sequence alignment