Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   HMPREF9319_RS09840 Genome accession   NZ_GL397128
Coordinates   2048682..2049458 (+) Length   258 a.a.
NCBI ID   WP_003067028.1    Uniprot ID   -
Organism   Streptococcus equinus ATCC 700338     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2043682..2054458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9319_RS10585 - 2045975..2046118 (+) 144 WP_160312943.1 hypothetical protein -
  HMPREF9319_RS09830 (HMPREF9319_2054) rlmH 2046667..2047146 (-) 480 WP_003067023.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  HMPREF9319_RS09835 (HMPREF9319_2055) htrA 2047357..2048622 (+) 1266 WP_013852370.1 S1C family serine protease Regulator
  HMPREF9319_RS09840 (HMPREF9319_2056) spo0J 2048682..2049458 (+) 777 WP_003067028.1 ParB/RepB/Spo0J family partition protein Regulator
  HMPREF9319_RS09845 (HMPREF9319_2057) dnaA 2049662..2051017 (+) 1356 WP_003067030.1 chromosomal replication initiator protein DnaA -
  HMPREF9319_RS09850 (HMPREF9319_2058) dnaN 2051175..2052311 (+) 1137 WP_003067033.1 DNA polymerase III subunit beta -
  HMPREF9319_RS09855 (HMPREF9319_2059) - 2052442..2053326 (+) 885 WP_003067036.1 diacylglycerol/lipid kinase family protein -
  HMPREF9319_RS09860 (HMPREF9319_2060) - 2053338..2053532 (+) 195 WP_003067038.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 29588.21 Da        Isoelectric Point: 9.6227

>NTDB_id=1111713 HMPREF9319_RS09840 WP_003067028.1 2048682..2049458(+) (spo0J) [Streptococcus equinus ATCC 700338]
MPETLTLIKIENISPNPYQPRLEFKQEELEELARSIKANGLIQPIIVRESTVFGYELIAGERRLRASKIAGLTEIPAIIK
NISNQESMQLAIVENLQRSDLNPIEEAKAYQQLLEKNQMTHEELAQFMGKSRPYITNCLRLLNLPRSLSDAVEKGDLSQG
HARVLLTLKNAGEQEKWYQKILTEDLSVRKLERLLKPAKQKKNRSKKEDIFIRNQEEELAKQLGLPVKITISKTGTKGDV
SLYFQSEEDLNRIINKLK

Nucleotide


Download         Length: 777 bp        

>NTDB_id=1111713 HMPREF9319_RS09840 WP_003067028.1 2048682..2049458(+) (spo0J) [Streptococcus equinus ATCC 700338]
ATGCCTGAAACACTCACATTAATCAAAATTGAAAATATCTCACCTAATCCCTACCAACCCCGTTTAGAATTTAAACAAGA
AGAGCTGGAAGAATTAGCACGTTCTATTAAAGCTAATGGGCTTATTCAGCCGATTATCGTCCGAGAATCAACTGTCTTTG
GTTATGAGCTTATTGCTGGTGAAAGACGTCTAAGAGCCTCAAAAATAGCAGGTTTAACCGAAATTCCTGCCATCATAAAA
AATATCTCCAATCAGGAGAGCATGCAGCTGGCTATCGTCGAAAATCTGCAACGTTCTGATTTAAATCCAATCGAAGAAGC
AAAAGCTTACCAGCAACTTCTGGAAAAAAATCAAATGACTCATGAAGAATTAGCACAGTTTATGGGAAAATCTCGCCCTT
ACATTACCAATTGCCTCAGATTACTTAATCTTCCTAGAAGTCTCTCTGATGCCGTTGAAAAAGGTGACCTGTCTCAAGGG
CACGCGCGTGTCCTTTTAACCCTTAAAAACGCGGGAGAACAAGAAAAGTGGTATCAAAAAATTCTAACAGAAGACCTTAG
TGTTAGAAAACTTGAACGTTTACTAAAACCTGCTAAACAGAAAAAAAATCGTTCTAAAAAGGAAGATATTTTTATTAGAA
ATCAAGAAGAAGAATTGGCTAAACAGTTAGGACTTCCTGTTAAAATTACTATCTCTAAAACCGGCACAAAAGGAGATGTG
AGTTTATATTTTCAGTCTGAAGAAGACTTAAACAGAATTATCAACAAGCTAAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-95)

HTH domain found in ParB protein (HTH_ParB)

(150-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

59.922

99.612

0.597

Multiple sequence alignment