Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   HMPREF9319_RS09475 Genome accession   NZ_GL397128
Coordinates   1971966..1972679 (+) Length   237 a.a.
NCBI ID   WP_003066857.1    Uniprot ID   -
Organism   Streptococcus equinus ATCC 700338     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1966966..1977679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9319_RS09460 (HMPREF9319_1977) - 1967820..1968152 (+) 333 WP_003066848.1 hypothetical protein -
  HMPREF9319_RS09465 (HMPREF9319_1978) treC 1968102..1969781 (-) 1680 WP_041972997.1 alpha,alpha-phosphotrehalase -
  HMPREF9319_RS09470 (HMPREF9319_1979) treP 1969796..1971769 (-) 1974 WP_003066854.1 PTS system trehalose-specific EIIBC component -
  HMPREF9319_RS09475 (HMPREF9319_1980) treR 1971966..1972679 (+) 714 WP_003066857.1 trehalose operon repressor Regulator
  HMPREF9319_RS09480 (HMPREF9319_1981) - 1973089..1973439 (-) 351 Protein_1933 isopeptide-forming domain-containing fimbrial protein -
  HMPREF9319_RS09485 (HMPREF9319_1982) ruvB 1974267..1975265 (-) 999 WP_003066863.1 Holliday junction branch migration DNA helicase RuvB -
  HMPREF9319_RS09490 (HMPREF9319_1983) nrdG 1975394..1976008 (-) 615 WP_003066866.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  HMPREF9319_RS09495 (HMPREF9319_1984) - 1976049..1976555 (-) 507 WP_003066869.1 GNAT family N-acetyltransferase -
  HMPREF9319_RS10875 (HMPREF9319_1985) - 1976567..1976728 (-) 162 WP_003066871.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27388.39 Da        Isoelectric Point: 7.3320

>NTDB_id=1111709 HMPREF9319_RS09475 WP_003066857.1 1971966..1972679(+) (treR) [Streptococcus equinus ATCC 700338]
MKKYEQIFKDLEHDITSGIYQAGDYLPTENELTQTYHMSRDTIRKALSLLAEAGLIQKIHGSGSQVIKHEQIDFPVSQLT
SYKELVDAHHINSKTNVIAIDKLIVDEKLAALTGFKKNNLVWRIIRQRVVDGTASVLDIDYLDKKIVPNMTREIAEQSIY
DYLENQLHLIIAFAQKEITIDQLTDRDKLLLDIGAEHHVVSVKSKVYLANKHQFQFTESRHKLEKFRFVDFATRKPQ

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1111709 HMPREF9319_RS09475 WP_003066857.1 1971966..1972679(+) (treR) [Streptococcus equinus ATCC 700338]
ATGAAAAAATACGAACAAATCTTTAAAGACCTTGAACACGATATTACCTCTGGCATTTACCAAGCTGGTGACTATCTCCC
CACCGAAAACGAGCTAACCCAAACCTACCATATGAGCCGTGACACTATCCGCAAAGCGCTTAGTCTCCTTGCTGAAGCAG
GGCTCATCCAGAAAATTCATGGTTCTGGCTCTCAAGTCATCAAACACGAGCAGATTGATTTTCCCGTTTCACAGCTCACA
AGCTATAAAGAACTGGTCGATGCTCACCATATCAATTCCAAAACCAATGTCATTGCCATTGATAAACTTATCGTTGATGA
AAAATTAGCTGCGCTGACAGGTTTCAAGAAAAATAACCTTGTCTGGCGAATCATTCGCCAACGTGTCGTTGACGGCACCG
CTTCTGTCCTTGACATTGATTATTTAGACAAAAAAATCGTGCCAAATATGACACGAGAAATCGCCGAACAATCCATTTAC
GATTACCTTGAAAACCAACTCCACCTCATCATCGCTTTCGCTCAAAAAGAAATCACCATTGACCAGCTAACTGACCGTGA
CAAACTACTCCTTGACATCGGTGCCGAACACCACGTTGTCTCTGTCAAATCAAAAGTTTACCTCGCCAACAAACACCAAT
TCCAATTCACCGAAAGCAGACACAAACTCGAAAAATTCCGCTTCGTTGACTTCGCAACCCGAAAACCACAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

71.795

98.734

0.709

Multiple sequence alignment