Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   HMPREF9319_RS01305 Genome accession   NZ_GL397128
Coordinates   261840..262886 (+) Length   348 a.a.
NCBI ID   WP_003063311.1    Uniprot ID   A0AAW6YHF4
Organism   Streptococcus equinus ATCC 700338     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 256840..267886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9319_RS01290 (HMPREF9319_0253) - 258107..259762 (+) 1656 WP_003063306.1 peptide ABC transporter substrate-binding protein -
  HMPREF9319_RS01295 (HMPREF9319_0254) - 259872..260786 (+) 915 WP_003063307.1 ABC transporter permease -
  HMPREF9319_RS01300 (HMPREF9319_0255) - 260797..261828 (+) 1032 WP_003063309.1 ABC transporter permease -
  HMPREF9319_RS01305 (HMPREF9319_0256) oppD 261840..262886 (+) 1047 WP_003063311.1 ABC transporter ATP-binding protein Regulator
  HMPREF9319_RS01310 (HMPREF9319_0257) amiF 262886..263815 (+) 930 WP_003063313.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38692.32 Da        Isoelectric Point: 4.7594

>NTDB_id=1111670 HMPREF9319_RS01305 WP_003063311.1 261840..262886(+) (oppD) [Streptococcus equinus ATCC 700338]
MTEETILQVKNLRVDFHTYAGEIKAIRDVSFDLKEGETLAIVGESGSGKSVTTKTLMGLSASNAEVTGDIDFKGKRLIEL
KEDEWIKVRGNEIAMIFQDPMTSLDPTMKIGQQIAEPIMIHEKVSKEEALKRALELMKNVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAANPDILIADEPTTALDVTIQAQILNLMKQIQKERGSSIIFITHDLGVVAGMADRVAVMYAGKIIEYGTV
DEVFYNPQHPYTWGLLNSMPTTDTEAGSLQSIPGTPPDLLNPPKGDAFAPRNEFALDIDYEEEPPMFKVSDTHFAATWLL
DERAPKVTPPLPIQKRWAKWKELEGRKA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1111670 HMPREF9319_RS01305 WP_003063311.1 261840..262886(+) (oppD) [Streptococcus equinus ATCC 700338]
ATGACTGAAGAAACAATTTTACAAGTTAAAAACCTCCGTGTAGATTTCCATACCTATGCTGGGGAAATTAAAGCTATTCG
TGATGTCAGCTTTGACTTAAAAGAAGGCGAAACGCTTGCCATTGTTGGTGAGTCAGGTTCAGGTAAATCTGTAACAACAA
AAACGTTGATGGGCTTGTCAGCTTCAAATGCAGAAGTTACAGGAGACATCGATTTTAAGGGTAAAAGATTAATAGAATTA
AAAGAAGACGAATGGATTAAGGTTCGTGGAAATGAAATTGCAATGATTTTCCAAGACCCTATGACAAGTCTTGATCCAAC
AATGAAAATTGGTCAACAAATTGCTGAACCAATTATGATTCATGAAAAAGTTTCTAAAGAAGAAGCTTTAAAACGTGCTT
TGGAACTCATGAAAAATGTTGGTATTCCAAACGCAGAAGAACATATTAATGATTATCCGCACCAATGGTCAGGTGGTATG
CGTCAACGTGCTGTTATTGCAATTGCCTTGGCAGCAAATCCAGATATTTTAATTGCTGATGAACCTACAACAGCCTTGGA
CGTAACTATTCAAGCACAAATTTTGAATTTAATGAAACAAATTCAAAAAGAACGTGGCTCATCAATCATCTTTATCACGC
ATGACCTCGGTGTTGTTGCGGGAATGGCTGATCGTGTTGCTGTTATGTATGCTGGTAAGATTATTGAATATGGGACAGTA
GACGAAGTATTCTATAACCCGCAACATCCATATACTTGGGGGCTTTTGAATTCAATGCCAACAACAGATACTGAAGCAGG
AAGCCTTCAATCTATCCCAGGTACACCGCCAGATCTCCTCAATCCACCAAAAGGTGATGCTTTTGCACCACGTAACGAGT
TTGCTTTAGACATTGACTACGAGGAAGAACCACCAATGTTTAAAGTTAGTGATACGCATTTTGCAGCTACATGGTTGTTA
GATGAACGTGCACCTAAAGTAACACCACCATTACCAATTCAAAAACGTTGGGCAAAATGGAAAGAACTTGAAGGGAGAAA
AGCTTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(27-183)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

80.692

99.713

0.805
  amiE Streptococcus salivarius strain HSISS4

59.172

97.126

0.575
  amiE Streptococcus thermophilus LMG 18311

58.876

97.126

0.572
  amiE Streptococcus thermophilus LMD-9

58.876

97.126

0.572

Multiple sequence alignment