Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   HMPREF9319_RS01310 Genome accession   NZ_GL397128
Coordinates   262886..263815 (+) Length   309 a.a.
NCBI ID   WP_003063313.1    Uniprot ID   A0AAW6YLS0
Organism   Streptococcus equinus ATCC 700338     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 257886..268815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9319_RS01290 (HMPREF9319_0253) - 258107..259762 (+) 1656 WP_003063306.1 peptide ABC transporter substrate-binding protein -
  HMPREF9319_RS01295 (HMPREF9319_0254) - 259872..260786 (+) 915 WP_003063307.1 ABC transporter permease -
  HMPREF9319_RS01300 (HMPREF9319_0255) - 260797..261828 (+) 1032 WP_003063309.1 ABC transporter permease -
  HMPREF9319_RS01305 (HMPREF9319_0256) oppD 261840..262886 (+) 1047 WP_003063311.1 ABC transporter ATP-binding protein Regulator
  HMPREF9319_RS01310 (HMPREF9319_0257) amiF 262886..263815 (+) 930 WP_003063313.1 ABC transporter ATP-binding protein Regulator
  HMPREF9319_RS01320 (HMPREF9319_0260) - 268303..268566 (-) 264 WP_117479781.1 hypothetical protein -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35065.89 Da        Isoelectric Point: 5.8016

>NTDB_id=1111671 HMPREF9319_RS01310 WP_003063313.1 262886..263815(+) (amiF) [Streptococcus equinus ATCC 700338]
MTENRKKLVELKNVSLTFNEGKKNEVKAIDNISFDIYEGEVFGLVGESGSGKTTVGRAILKLYDINKGEIDFDGETISHL
KGKELHEFRKNAQMIFQDPQASLNGRMKIRDIVAEGLDIHKLVNSKEERDRKVQDLLALVGLNKDHSTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQREQGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDD
VYNHPIHPYTKSLLTAIPEPDPESERNRIHEEYDPSVELDGQPREMREITPGHFVLCTEAEAEAYKKEL

Nucleotide


Download         Length: 930 bp        

>NTDB_id=1111671 HMPREF9319_RS01310 WP_003063313.1 262886..263815(+) (amiF) [Streptococcus equinus ATCC 700338]
ATGACTGAAAATAGAAAAAAGCTTGTTGAACTTAAAAATGTATCATTGACTTTTAACGAAGGTAAAAAGAACGAAGTAAA
AGCTATTGATAATATCAGTTTTGATATTTACGAAGGTGAAGTTTTCGGTCTTGTTGGAGAATCAGGTTCTGGTAAGACAA
CCGTTGGTCGTGCTATTTTGAAATTGTACGATATTAATAAAGGTGAAATTGATTTTGATGGTGAAACCATCTCTCACCTT
AAAGGGAAAGAATTGCACGAATTCCGTAAAAATGCTCAAATGATTTTCCAAGACCCACAAGCTAGTCTTAATGGTCGTAT
GAAAATTCGTGACATTGTTGCGGAAGGACTTGACATCCATAAATTAGTTAACAGTAAAGAAGAACGTGACCGAAAAGTTC
AAGATTTACTTGCTTTAGTTGGACTTAACAAAGACCATTCAACACGCTATCCACATGAATTTTCAGGTGGACAACGCCAA
CGTATTGGTATCGCTCGTGCTCTTGCCGTTGAACCAAAGTTCATCATTGCCGATGAACCAATTTCAGCCCTTGATGTGTC
AATCCAAGCTCAAGTTGTTAACCTTATGCAAAAACTTCAAAGAGAACAGGGTTTAACATATCTCTTTATCGCTCACGATT
TGTCAATGGTTAAATACATCTCAGATCGTATTGGAGTTATGCACTGGGGTAAAATGCTTGAAATTGGAACATCTGATGAT
GTTTATAATCATCCAATTCACCCATATACTAAGAGCTTGTTGACTGCAATTCCAGAACCAGACCCAGAGTCTGAAAGAAA
TCGTATCCATGAAGAGTACGATCCAAGTGTAGAACTAGATGGCCAACCACGTGAAATGCGTGAAATTACACCTGGACACT
TTGTTCTTTGTACAGAAGCAGAAGCAGAAGCTTATAAAAAAGAATTATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-272)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

54.754

98.706

0.54
  amiF Streptococcus salivarius strain HSISS4

54.754

98.706

0.54
  amiF Streptococcus thermophilus LMG 18311

54.426

98.706

0.537

Multiple sequence alignment