Detailed information    

insolico Bioinformatically predicted

Overview

Name   MMJJ_RS05685   Type   Machinery gene
Locus tag   ACPB8Q_RS04415 Genome accession   NZ_CP186926
Coordinates   785399..785620 (+) Length   73 a.a.
NCBI ID   WP_423791981.1    Uniprot ID   -
Organism   Methanocaldococcus indicus strain SL43     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 780399..790620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACPB8Q_RS04390 (ACPB8Q_04385) - 781288..782982 (+) 1695 WP_423791976.1 methyl-accepting chemotaxis protein -
  ACPB8Q_RS04395 (ACPB8Q_04390) - 782979..784148 (-) 1170 WP_423791977.1 chloride channel protein -
  ACPB8Q_RS04400 (ACPB8Q_04395) - 784162..784443 (-) 282 WP_423791978.1 transcriptional regulator -
  ACPB8Q_RS04405 (ACPB8Q_04400) - 784440..784967 (-) 528 WP_423791979.1 hypothetical protein -
  ACPB8Q_RS04410 (ACPB8Q_04405) - 784954..785283 (-) 330 WP_423791980.1 gamma-glutamylcyclotransferase family protein -
  ACPB8Q_RS04415 (ACPB8Q_04410) MMJJ_RS05685 785399..785620 (+) 222 WP_423791981.1 class III signal peptide-containing protein Machinery gene
  ACPB8Q_RS04420 (ACPB8Q_04415) - 785689..786795 (-) 1107 WP_423791982.1 ATP-binding protein -
  ACPB8Q_RS04425 (ACPB8Q_04420) - 786824..787357 (-) 534 WP_423791983.1 winged helix-turn-helix domain-containing protein -
  ACPB8Q_RS04430 (ACPB8Q_04425) - 787479..788153 (+) 675 WP_423791984.1 6-hydroxymethylpterin diphosphokinase MptE-like protein -
  ACPB8Q_RS04435 (ACPB8Q_04430) - 788158..788403 (+) 246 WP_423791985.1 hypothetical protein -
  ACPB8Q_RS04440 (ACPB8Q_04435) - 788427..789053 (+) 627 WP_423791986.1 IS6 family transposase -

Sequence

Protein


Download         Length: 73 a.a.        Molecular weight: 7463.77 Da        Isoelectric Point: 10.7567

>NTDB_id=1111537 ACPB8Q_RS04415 WP_423791981.1 785399..785620(+) (MMJJ_RS05685) [Methanocaldococcus indicus strain SL43]
MRIIKKLLSKRGQVSMEIGILVAAAVAVAAIAAYFYASNVKVAAENAGKGANGTINTLTSAANKTAAKIENLT

Nucleotide


Download         Length: 222 bp        

>NTDB_id=1111537 ACPB8Q_RS04415 WP_423791981.1 785399..785620(+) (MMJJ_RS05685) [Methanocaldococcus indicus strain SL43]
ATGAGAATCATAAAAAAATTATTATCAAAAAGAGGGCAAGTATCTATGGAAATAGGTATTTTAGTAGCAGCAGCAGTAGC
TGTTGCTGCTATAGCCGCATATTTCTACGCTTCTAATGTAAAAGTAGCTGCTGAAAATGCTGGAAAAGGTGCAAATGGTA
CTATTAACACTTTAACTTCTGCAGCTAATAAAACAGCTGCTAAAATTGAGAATTTAACCTAA

Domains

Predicted by InterproScan.

Class III signal peptide (Class_IIIsignal)

(10-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  MMJJ_RS05685 Methanococcus maripaludis strain DSM 2067

58.904

100

0.589
  epdE Methanococcus maripaludis strain DSM 2067

55.738

83.562

0.466

Multiple sequence alignment