Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACN076_RS07560 Genome accession   NZ_CP184836
Coordinates   1541603..1543405 (-) Length   600 a.a.
NCBI ID   WP_420789757.1    Uniprot ID   -
Organism   Streptococcus sp. K0074     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1536603..1548405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN076_RS07545 (ACN076_07545) ftsW 1538498..1539721 (-) 1224 WP_420789755.1 cell division peptidoglycan polymerase FtsW -
  ACN076_RS07550 (ACN076_07550) prsA 1539883..1540821 (-) 939 WP_420789756.1 peptidylprolyl isomerase PrsA -
  ACN076_RS07555 (ACN076_07555) - 1540888..1541601 (-) 714 WP_414304239.1 O-methyltransferase -
  ACN076_RS07560 (ACN076_07560) pepF 1541603..1543405 (-) 1803 WP_420789757.1 oligoendopeptidase F Regulator
  ACN076_RS07565 (ACN076_07565) coiA 1543424..1544377 (-) 954 WP_420789758.1 competence protein CoiA Machinery gene
  ACN076_RS07570 (ACN076_07570) tehB 1544556..1545416 (-) 861 WP_049543521.1 SAM-dependent methyltransferase TehB -
  ACN076_RS07575 (ACN076_07575) smpB 1545432..1545899 (-) 468 WP_001051750.1 SsrA-binding protein SmpB -
  ACN076_RS07580 (ACN076_07580) rnr 1545862..1548216 (-) 2355 WP_420789759.1 ribonuclease R -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69866.97 Da        Isoelectric Point: 4.7148

>NTDB_id=1111463 ACN076_RS07560 WP_420789757.1 1541603..1543405(-) (pepF) [Streptococcus sp. K0074]
MVLQRQEINKKDKWDLSTIYQTDQAWEEALQVLTDKLETVARFAGHLLDSADSLLEITEYSLEMERQMEKLYVYAHMKND
QDTREAKYQEYYAKAMTLYSQLDQAFSFYEPEFMEISEKQYADFLESQPKLQVYQHYFDKLLQGKDHVLSQREEELLAGA
GEIFGSASETFAILDNADIVFPYVLDDDGKEVQLSHGTYTRLMESKNREVRRGAYQALYATYEQFQHTYAKTLQTNVKVQ
NYRAKVRNYKSARHAALAANFVPESVYDNLVAAVRKHLPLLHRYLKLRSKILGISDLKMYDVYTPLSSVEYSFTYQEALK
KAEDALAVLGEDYLSRVKRAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDNLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNNFLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSDF
LNKLYADLNQEYYGLSKEDNPEIQYEWARIPHFYYNYYVYQYSTGFAAASALAEKIVHGSQEDRDRYIDYLKAGKSDYPL
NVMRKAGVDMEKEDYLNDAFAVFERRLNEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1111463 ACN076_RS07560 WP_420789757.1 1541603..1543405(-) (pepF) [Streptococcus sp. K0074]
ATGGTATTACAACGACAAGAAATAAATAAAAAAGATAAATGGGATCTATCAACGATCTATCAAACAGATCAGGCTTGGGA
AGAAGCCTTACAAGTTTTAACAGATAAATTAGAGACAGTTGCTCGTTTTGCAGGTCATTTGTTAGATAGTGCTGATAGTT
TACTTGAAATTACTGAATATTCACTTGAAATGGAACGCCAGATGGAGAAACTTTACGTTTATGCTCATATGAAAAATGAC
CAAGACACGCGTGAAGCCAAGTATCAAGAGTACTACGCCAAGGCAATGACTCTATACAGCCAGCTAGACCAAGCCTTTTC
ATTCTATGAACCTGAATTTATGGAGATTAGTGAAAAGCAGTATGCTGACTTTTTAGAGTCTCAACCAAAATTGCAGGTTT
ATCAACACTATTTTGACAAGCTATTGCAAGGCAAGGACCATGTTCTTTCACAACGTGAAGAAGAGCTATTAGCTGGAGCT
GGAGAAATCTTTGGTTCGGCAAGTGAAACCTTCGCTATCTTGGACAATGCGGATATTGTATTCCCTTATGTCCTTGACGA
TGATGGTAAGGAAGTTCAGCTATCTCATGGAACTTACACACGTTTGATGGAGTCTAAAAATCGTGAGGTGCGTCGTGGTG
CCTATCAAGCTCTTTATGCGACTTATGAACAATTCCAACACACCTATGCCAAAACCTTGCAAACCAATGTTAAAGTGCAA
AACTACCGTGCCAAAGTTCGCAACTATAAGAGTGCTCGTCATGCAGCCCTAGCGGCGAATTTTGTTCCAGAGAGTGTTTA
TGACAATTTGGTAGCAGCAGTTCGCAAGCATTTGCCACTCTTGCATCGTTATCTTAAGCTTCGTTCTAAAATCTTGGGGA
TTTCAGACCTCAAGATGTACGATGTCTACACACCGCTTTCATCTGTTGAATACAGTTTTACTTACCAAGAAGCCTTGAAA
AAGGCAGAAGATGCTTTGGCAGTCTTGGGTGAGGATTACTTGAGCCGTGTTAAACGTGCCTTCAGCGAACGTTGGATTGA
TGTTTACGAAAACCAAGGCAAGCGTTCAGGTGCCTACTCAGGTGGTTCTTATGATACCAATGCCTTTATGCTTCTTAACT
GGCAGGACAATCTGGACAATCTCTTTACCCTTGTTCATGAAACAGGCCACAGTATGCACTCAAGCTATACTCGTGAAACG
CAGCCTTATGTTTACGGAGATTATTCTATCTTTTTGGCAGAGATTGCATCAACGACCAATGAAAATATCTTGACGGAGAA
ATTATTGGAAGAAGTGGAAGACGACGCAACGCGCTTTGCTATTCTTAATAACTTCCTAGATGGTTTCCGTGGAACAGTTT
TCCGTCAAACTCAATTCGCTGAGTTTGAACACGCTATTCACCAAGCGGATCAAAATGGGGAAGTCTTGACCAGTGATTTC
CTAAATAAACTCTACGCAGACTTGAACCAAGAGTATTATGGTTTGAGTAAGGAAGACAATCCTGAAATCCAATACGAGTG
GGCCCGAATTCCACACTTCTACTATAACTACTATGTATACCAATATTCAACAGGCTTTGCAGCAGCCTCAGCCTTGGCTG
AAAAGATTGTCCATGGTAGTCAAGAAGACCGTGACCGCTATATCGACTATCTCAAGGCAGGTAAGTCTGACTATCCACTT
AATGTCATGAGAAAAGCTGGTGTTGATATGGAGAAGGAAGACTATCTCAATGATGCCTTTGCAGTCTTTGAACGTCGTTT
GAATGAGTTTGAAGCCCTTGTTGAAAAATTGGGATTGGCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

66.946

99.333

0.665

Multiple sequence alignment