Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   ACOI0R_RS07395 Genome accession   NZ_CP184802
Coordinates   420404..421000 (-) Length   198 a.a.
NCBI ID   WP_420745784.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. piscicida strain DQ-SS1     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 415404..426000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOI0R_RS07380 - 416496..417509 (+) 1014 WP_065171762.1 Fe(3+) ABC transporter substrate-binding protein -
  ACOI0R_RS07385 - 417666..419291 (+) 1626 WP_065171761.1 ABC transporter permease -
  ACOI0R_RS07390 - 419294..420331 (+) 1038 WP_420745783.1 ABC transporter ATP-binding protein -
  ACOI0R_RS07395 opaR 420404..421000 (-) 597 WP_420745784.1 TetR/AcrR family transcriptional regulator Regulator
  ACOI0R_RS07400 hpt 421221..421757 (+) 537 WP_005297644.1 hypoxanthine phosphoribosyltransferase -
  ACOI0R_RS07405 can 421832..422503 (-) 672 WP_005297646.1 carbonate dehydratase -
  ACOI0R_RS07410 - 422602..423525 (+) 924 WP_237029696.1 ABC transporter ATP-binding protein -
  ACOI0R_RS07415 - 423522..424292 (+) 771 WP_420745484.1 ABC transporter permease -
  ACOI0R_RS07420 panC 424410..425300 (-) 891 WP_005297652.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22739.03 Da        Isoelectric Point: 7.1177

>NTDB_id=1111333 ACOI0R_RS07395 WP_420745784.1 420404..421000(-) (opaR) [Photobacterium damselae subsp. piscicida strain DQ-SS1]
MDMVIKRTRTRLSPEKRREQLLNSALDVFARRGIGRGGHADIAEMANVSVATVFNYFPTREDLVEQVLIHVESRFNKLLT
HSLNDEMPTAKAKLTNLTDCLIKAVIEQHDWLKVWFEWSTSVRDDIWPLFIKTNKGNLQKLTAVFEQGLTAGEFSRSQSA
SDLAHMFHGTCYVLYLQTHLTLDPEIMQRQADSYLQSL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1111333 ACOI0R_RS07395 WP_420745784.1 420404..421000(-) (opaR) [Photobacterium damselae subsp. piscicida strain DQ-SS1]
ATGGACATGGTGATTAAGCGTACTCGTACTCGCTTATCTCCAGAAAAACGTCGAGAGCAGCTACTCAATAGCGCACTGGA
TGTTTTTGCTCGTCGTGGTATTGGCCGAGGGGGCCACGCAGATATCGCGGAAATGGCAAATGTCTCTGTTGCGACCGTTT
TCAATTATTTTCCAACTCGCGAAGATTTAGTAGAACAGGTATTAATTCACGTTGAATCTCGTTTCAATAAACTACTGACA
CACTCTCTCAACGATGAAATGCCAACCGCAAAAGCCAAACTGACTAACCTTACCGATTGCTTAATTAAGGCTGTAATAGA
GCAGCACGATTGGCTAAAAGTCTGGTTTGAATGGAGTACATCAGTACGTGATGATATTTGGCCGCTATTTATCAAAACCA
ATAAAGGTAACTTACAAAAGTTAACCGCGGTTTTTGAACAGGGATTAACAGCTGGAGAATTTAGTCGCTCTCAATCTGCA
TCAGATTTAGCACATATGTTTCACGGTACCTGTTATGTGCTGTACTTACAAACGCACCTAACCTTAGACCCTGAAATTAT
GCAGCGACAAGCTGATAGCTATTTACAGAGCCTGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(21-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

48.485

100

0.485
  hapR Vibrio cholerae C6706

48.241

100

0.485
  hapR Vibrio cholerae strain A1552

48.241

100

0.485

Multiple sequence alignment