Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   ACNR93_RS05160 Genome accession   NZ_CP184736
Coordinates   1036289..1037518 (-) Length   409 a.a.
NCBI ID   WP_024343987.1    Uniprot ID   -
Organism   Streptococcus equinus strain NM-2-29     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1031289..1042518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNR93_RS05140 (ACNR93_05140) - 1032513..1033181 (+) 669 WP_029875966.1 DUF1275 family protein -
  ACNR93_RS05145 (ACNR93_05145) mmuM 1033216..1034160 (-) 945 WP_420543231.1 homocysteine S-methyltransferase -
  ACNR93_RS05150 (ACNR93_05150) - 1034173..1035549 (-) 1377 WP_141348049.1 amino acid permease -
  ACNR93_RS05155 (ACNR93_05155) yihA 1035686..1036279 (-) 594 WP_004232043.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  ACNR93_RS05160 (ACNR93_05160) clpX 1036289..1037518 (-) 1230 WP_024343987.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ACNR93_RS05165 (ACNR93_05165) - 1037555..1037725 (-) 171 WP_021142431.1 hypothetical protein -
  ACNR93_RS05170 (ACNR93_05170) - 1037741..1038235 (-) 495 WP_021142432.1 dihydrofolate reductase -
  ACNR93_RS05175 (ACNR93_05175) - 1038319..1039158 (-) 840 WP_021142433.1 thymidylate synthase -
  ACNR93_RS05180 (ACNR93_05180) - 1039486..1040664 (+) 1179 WP_420543232.1 hydroxymethylglutaryl-CoA synthase -
  ACNR93_RS05185 (ACNR93_05185) - 1040651..1041925 (+) 1275 WP_420543233.1 hydroxymethylglutaryl-CoA reductase, degradative -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45200.64 Da        Isoelectric Point: 4.4317

>NTDB_id=1110950 ACNR93_RS05160 WP_024343987.1 1036289..1037518(-) (clpX) [Streptococcus equinus strain NM-2-29]
MVGNRTNDVKVYCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLAEVPKPKELLATLDEYVVGQER
AKRALAVAVYNHYKRVSFAESRDEEDVELQKSNILLIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADFNIERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNRKIDEDASYMQEIISEDIQKFGLIPEFIGRLPVVAALEQLTADDLVRI
LTEPRNALVKQYQTLLSYDGVELEFDEDALQAIANKAIERKTGARGLRSIIEETMMDIMFEIPSREEVTKVRITKDAVEG
TDKPILETA

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1110950 ACNR93_RS05160 WP_024343987.1 1036289..1037518(-) (clpX) [Streptococcus equinus strain NM-2-29]
ATGGTTGGAAATCGAACAAATGATGTAAAAGTTTATTGCTCATTTTGTGGAAAAAGCCAAGACGAAGTAAAAAAAATTAT
TGCAGGAAATAATGTTTTTATTTGTAATGAATGTGTGGCTTTATCCCAAGAGATTATTAAAGAAGAATTAGCAGAAGAAG
TTCTTGCAGATTTGGCAGAAGTTCCAAAACCAAAAGAATTACTAGCTACCCTTGATGAATATGTTGTTGGTCAAGAACGT
GCAAAACGTGCTCTTGCAGTAGCAGTTTACAATCACTACAAGCGTGTATCTTTTGCTGAAAGTCGTGATGAAGAAGATGT
TGAATTGCAAAAATCAAACATTTTGCTTATCGGACCAACAGGGTCAGGGAAAACTTTCCTTGCTCAAACATTGGCTAAAA
GTCTTAATGTTCCATTTGCGATTGCAGATGCGACATCATTGACTGAAGCAGGATATGTCGGTGAAGACGTTGAAAATATC
CTTTTGAAACTGATTCAAGCAGCTGATTTTAATATTGAACGTGCTGAACGTGGTATTATCTACGTCGATGAAATTGATAA
AATCGCCAAAAAAGGTGAAAATGTTTCAATTACTCGTGACGTTTCAGGTGAAGGTGTTCAACAAGCCCTCCTTAAAATCA
TTGAAGGGACAGTTGCTAGCGTACCACCACAAGGTGGACGTAAACACCCTAACCAAGAAATGATTCAAATTGATACCAAG
AACATTCTTTTCATCGTTGGTGGTGCGTTCGATGGTATCGAAGATATTGTTAAACAACGCCTTGGTGAAAAAATTATTGG
TTTTGGTCAAAATAACCGTAAAATCGATGAAGATGCATCTTATATGCAAGAAATCATCTCAGAAGATATTCAAAAATTTG
GTCTTATTCCAGAGTTTATCGGACGCTTGCCTGTAGTAGCTGCGCTTGAACAATTGACTGCGGATGATTTGGTTCGTATC
TTGACTGAACCTCGCAATGCCTTGGTTAAACAATACCAAACATTGCTATCTTATGATGGTGTTGAGTTGGAATTTGATGA
AGATGCTCTTCAAGCAATTGCCAATAAAGCTATCGAACGTAAGACAGGTGCGCGTGGACTTCGTTCAATTATCGAAGAAA
CAATGATGGATATCATGTTTGAAATTCCTAGTCGCGAAGAAGTTACCAAAGTTCGCATCACTAAAGATGCTGTCGAAGGT
ACTGATAAACCTATCTTAGAAACTGCATAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(110-305)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(312-390)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

90.22

100

0.902
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.853

98.044

0.577

Multiple sequence alignment