Detailed information
Bioinformatically predicted
Overview
| Name | dprA | Type | Machinery gene |
| Locus tag | ACKTT6_RS00300 | Genome accession | NZ_AP038759 |
| Coordinates | 66020..66892 (+) | Length | 290 a.a. |
| NCBI ID | WP_001829468.1 | Uniprot ID | - |
| Organism | Staphylococcus epidermidis strain BG-PG180 | ||
| Function | ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 33867..76073 | 66020..66892 | within | 0 |
Gene organization within MGE regions
Location: 33867..76073
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACKTT6_RS00160 (BGPG180_00310) | rsgA | 34506..35381 (+) | 876 | WP_002469378.1 | ribosome small subunit-dependent GTPase A | - |
| ACKTT6_RS00165 (BGPG180_00320) | rpe | 35382..36026 (+) | 645 | WP_001830173.1 | ribulose-phosphate 3-epimerase | - |
| ACKTT6_RS00170 (BGPG180_00330) | - | 36031..36666 (+) | 636 | WP_001830164.1 | thiamine diphosphokinase | - |
| ACKTT6_RS00175 (BGPG180_00340) | rpmB | 36749..36937 (-) | 189 | WP_001830107.1 | 50S ribosomal protein L28 | - |
| ACKTT6_RS00180 (BGPG180_00350) | - | 37295..37669 (+) | 375 | WP_001830156.1 | Asp23/Gls24 family envelope stress response protein | - |
| ACKTT6_RS00185 (BGPG180_00360) | fakA | 37684..39342 (+) | 1659 | WP_002456580.1 | fatty acid kinase catalytic subunit FakA | - |
| ACKTT6_RS00190 (BGPG180_00370) | recG | 39546..41594 (+) | 2049 | WP_002456579.1 | ATP-dependent DNA helicase RecG | - |
| ACKTT6_RS00195 (BGPG180_00380) | fapR | 41753..42313 (+) | 561 | WP_001830099.1 | transcription factor FapR | - |
| ACKTT6_RS00200 (BGPG180_00390) | plsX | 42315..43292 (+) | 978 | WP_002469384.1 | phosphate acyltransferase PlsX | - |
| ACKTT6_RS00205 (BGPG180_00400) | fabD | 43294..44220 (+) | 927 | WP_002469385.1 | ACP S-malonyltransferase | - |
| ACKTT6_RS00210 (BGPG180_00410) | fabG | 44213..44947 (+) | 735 | WP_001830161.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| ACKTT6_RS00215 (BGPG180_00420) | - | 45175..45408 (+) | 234 | WP_001830184.1 | acyl carrier protein | - |
| ACKTT6_RS00220 (BGPG180_00430) | rnc | 45523..46260 (+) | 738 | WP_002456575.1 | ribonuclease III | - |
| ACKTT6_RS00225 (BGPG180_00440) | smc | 46387..49956 (+) | 3570 | WP_002497629.1 | chromosome segregation protein SMC | - |
| ACKTT6_RS00230 (BGPG180_00450) | ftsY | 49953..51179 (+) | 1227 | WP_002456573.1 | signal recognition particle-docking protein FtsY | - |
| ACKTT6_RS00235 (BGPG180_00460) | - | 51181..51513 (+) | 333 | WP_002457379.1 | putative DNA-binding protein | - |
| ACKTT6_RS00240 (BGPG180_00470) | ffh | 51544..52911 (+) | 1368 | WP_001830113.1 | signal recognition particle protein | - |
| ACKTT6_RS00245 (BGPG180_00480) | rpsP | 53219..53494 (+) | 276 | WP_002439483.1 | 30S ribosomal protein S16 | - |
| ACKTT6_RS00250 (BGPG180_00490) | rimM | 53621..54124 (+) | 504 | WP_001832559.1 | ribosome maturation factor RimM | - |
| ACKTT6_RS00255 (BGPG180_00500) | trmD | 54124..54861 (+) | 738 | WP_001829466.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| ACKTT6_RS00260 (BGPG180_00510) | rplS | 54967..55317 (+) | 351 | WP_002436293.1 | 50S ribosomal protein L19 | - |
| ACKTT6_RS00265 (BGPG180_00520) | - | 55847..58450 (-) | 2604 | WP_002487708.1 | YfhO family protein | - |
| ACKTT6_RS00270 (BGPG180_00530) | - | 58443..61043 (-) | 2601 | WP_002456571.1 | YfhO family protein | - |
| ACKTT6_RS00275 (BGPG180_00540) | - | 61202..61351 (+) | 150 | WP_162154119.1 | hypothetical protein | - |
| ACKTT6_RS00280 (BGPG180_00550) | ylqF | 61372..62235 (+) | 864 | WP_001829495.1 | ribosome biogenesis GTPase YlqF | - |
| ACKTT6_RS00285 (BGPG180_00560) | - | 62240..63010 (+) | 771 | WP_001829514.1 | ribonuclease HII | - |
| ACKTT6_RS00290 (BGPG180_00570) | sucC | 63118..64284 (+) | 1167 | WP_002456569.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| ACKTT6_RS00295 (BGPG180_00580) | sucD | 64306..65214 (+) | 909 | WP_002446283.1 | succinate--CoA ligase subunit alpha | - |
| ACKTT6_RS00300 (BGPG180_00590) | dprA | 66020..66892 (+) | 873 | WP_001829468.1 | DNA-processing protein DprA | Machinery gene |
| ACKTT6_RS00305 (BGPG180_00600) | topA | 67075..69144 (+) | 2070 | WP_001829508.1 | type I DNA topoisomerase | - |
| ACKTT6_RS00310 (BGPG180_00610) | trmFO | 69169..70476 (+) | 1308 | WP_001832560.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| ACKTT6_RS00315 (BGPG180_00620) | xerC | 70731..71591 (+) | 861 | WP_002439503.1 | tyrosine recombinase XerC | - |
| ACKTT6_RS00320 (BGPG180_00630) | hslV | 71595..72137 (+) | 543 | WP_001829498.1 | ATP-dependent protease subunit HslV | - |
| ACKTT6_RS00325 (BGPG180_00640) | hslU | 72206..73609 (+) | 1404 | WP_002469380.1 | ATP-dependent protease ATPase subunit HslU | - |
| ACKTT6_RS00330 (BGPG180_00650) | codY | 73633..74406 (+) | 774 | WP_002446289.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| ACKTT6_RS00335 (BGPG180_00660) | rpsB | 74765..75553 (+) | 789 | WP_001832557.1 | 30S ribosomal protein S2 | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 33726.62 Da Isoelectric Point: 9.3618
>NTDB_id=111073 ACKTT6_RS00300 WP_001829468.1 66020..66892(+) (dprA) [Staphylococcus epidermidis strain BG-PG180]
MIQHTMLKLYWANFTTAQLHHLTSTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF
MIQHTMLKLYWANFTTAQLHHLTSTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF
Nucleotide
Download Length: 873 bp
>NTDB_id=111073 ACKTT6_RS00300 WP_001829468.1 66020..66892(+) (dprA) [Staphylococcus epidermidis strain BG-PG180]
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCACAACTTCATCATCTTACAAGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGGCTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGGGTACTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCACAACTTCATCATCTTACAAGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGGCTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGGGTACTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprA | Staphylococcus aureus N315 |
56.944 |
99.31 |
0.566 |
| dprA | Staphylococcus aureus MW2 |
56.944 |
99.31 |
0.566 |