Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   HQV12_RS02815 Genome accession   NZ_CP184658
Coordinates   587349..587918 (+) Length   189 a.a.
NCBI ID   WP_119098270.1    Uniprot ID   -
Organism   Staphylococcus aureus strain B0417     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 582349..592918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQV12_RS02790 (HQV12_02790) cysE 583562..584209 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  HQV12_RS02795 (HQV12_02795) cysS 584193..585593 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  HQV12_RS02800 (HQV12_02800) - 585586..585990 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  HQV12_RS02805 (HQV12_02805) rlmB 585998..586744 (+) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  HQV12_RS02810 (HQV12_02810) - 586744..587268 (+) 525 WP_000664738.1 NYN domain-containing protein -
  HQV12_RS02815 (HQV12_02815) sigH 587349..587918 (+) 570 WP_119098270.1 sigma-70 family RNA polymerase sigma factor Regulator
  HQV12_RS02820 (HQV12_02820) rpmG 588033..588176 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  HQV12_RS02825 (HQV12_02825) secE 588232..588414 (+) 183 WP_001074474.1 preprotein translocase subunit SecE -
  HQV12_RS02830 (HQV12_02830) nusG 588427..588975 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  HQV12_RS02835 (HQV12_02835) rplK 589156..589578 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  HQV12_RS02840 (HQV12_02840) rplA 589786..590478 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  HQV12_RS02845 (HQV12_02845) rplJ 590750..591250 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  HQV12_RS02850 (HQV12_02850) rplL 591293..591661 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  HQV12_RS02855 (HQV12_02855) - 591836..592444 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23040.96 Da        Isoelectric Point: 9.4170

>NTDB_id=1110666 HQV12_RS02815 WP_119098270.1 587349..587918(+) (sigH) [Staphylococcus aureus strain B0417]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQIFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1110666 HQV12_RS02815 WP_119098270.1 587349..587918(+) (sigH) [Staphylococcus aureus strain B0417]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAATATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.942

100

0.989
  sigH Staphylococcus aureus MW2

97.884

100

0.979

Multiple sequence alignment