Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ACKTT9_RS20335 Genome accession   NZ_AP038372
Coordinates   4530432..4532192 (-) Length   586 a.a.
NCBI ID   WP_407867333.1    Uniprot ID   -
Organism   Paenibacillus sp. P36     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4525432..4537192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKTT9_RS20325 (PAENIP36_40040) - 4526695..4528398 (-) 1704 WP_407873085.1 amylo-alpha-1,6-glucosidase -
  ACKTT9_RS20330 (PAENIP36_40050) rcrQ 4528570..4530435 (-) 1866 WP_407867332.1 ABC transporter ATP-binding protein Regulator
  ACKTT9_RS20335 (PAENIP36_40060) rcrP 4530432..4532192 (-) 1761 WP_407867333.1 ABC transporter ATP-binding protein Regulator
  ACKTT9_RS20340 (PAENIP36_40070) - 4532422..4532982 (-) 561 WP_407867334.1 hypothetical protein -
  ACKTT9_RS20345 (PAENIP36_40080) - 4533019..4533987 (-) 969 WP_407867335.1 helix-turn-helix transcriptional regulator -
  ACKTT9_RS20350 (PAENIP36_40090) - 4534134..4534613 (+) 480 WP_407867336.1 hypothetical protein -
  ACKTT9_RS20355 (PAENIP36_40100) - 4534691..4535167 (+) 477 WP_157320383.1 GyrI-like domain-containing protein -
  ACKTT9_RS20360 (PAENIP36_40110) ilvD 4535217..4536899 (-) 1683 WP_407867337.1 dihydroxy-acid dehydratase -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64708.34 Da        Isoelectric Point: 6.3259

>NTDB_id=111027 ACKTT9_RS20335 WP_407867333.1 4530432..4532192(-) (rcrP) [Paenibacillus sp. P36]
MLRIFSKLRLKEWIQVVISLVFIVAQVYLDLKLPDYMSEITRLVQTPGSEMSNIWIHGAYMLLCALGSLLSAVIVGFFAS
LIAASFSRQLRTLLFNKVDSFSMEEINRFSTSSLITRSTNDITQIQLLVTMGLQLIIKAPIMAVWAVTKIAGKGYEWSLA
TGCAVLILVIVIAFIMIFVLPKFRKMQTFTDNMNKVTRENLTGIRVVRAYNADDYQEAKFEKANVELTETQLFTTRGLAF
MLPVMSMIMSGLSLSIYWIGAYLIDSAQVADKLTIFSNMVVFSSYAMQVVMSFMMLAMMFVLLPRAAVSAKRINEVLDTR
PIIAEGSQTEGKPGVIGEVEFRNVSFKYPGAADYVLHNVSFSVKQGETVAFIGSTGSGKSTLVNLVPRFFDATEGEVLID
GVNVKEYVEEALYNKIGYVPQKAVLFRGTVSSNVGYGENGKDTTTADQIKKAISIAQGTDFIEAMEGQYDAAISQGGTNL
SGGQKQRLSIARAVSRNPEIYIFDDSFSALDYKTDRVLRSALKKETAGVTSMIVAQRIGTIMDADQIIVLDDGKVVGKGT
HKELLTTCEVYKEIAMSQLSEEELVS

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=111027 ACKTT9_RS20335 WP_407867333.1 4530432..4532192(-) (rcrP) [Paenibacillus sp. P36]
ATGTTAAGAATCTTTAGCAAACTAAGACTAAAAGAATGGATTCAAGTCGTGATCAGCCTCGTGTTTATCGTCGCACAGGT
TTATCTCGACTTGAAGTTGCCGGATTATATGTCTGAGATTACCCGGCTGGTACAGACACCAGGCAGCGAAATGAGCAACA
TCTGGATTCATGGAGCGTATATGCTGCTCTGCGCGCTTGGTAGTTTGCTGTCTGCCGTCATTGTAGGATTCTTTGCCTCC
CTTATCGCGGCGTCGTTCTCACGGCAGCTACGTACTTTGCTGTTCAACAAGGTAGATTCTTTTTCTATGGAAGAAATCAA
TCGATTTTCTACCTCCAGCTTAATCACACGTTCTACAAACGATATCACGCAAATTCAATTGCTTGTAACTATGGGATTAC
AACTAATTATTAAAGCACCTATTATGGCGGTATGGGCGGTTACAAAAATCGCTGGCAAGGGTTATGAATGGTCACTGGCA
ACCGGATGCGCGGTGTTGATTCTGGTTATTGTCATCGCGTTTATTATGATTTTTGTATTACCGAAATTCCGAAAAATGCA
GACCTTTACAGATAATATGAACAAGGTTACCCGAGAAAACCTCACTGGAATTCGTGTTGTTCGCGCCTATAATGCTGATG
ATTACCAAGAGGCAAAGTTTGAAAAAGCAAATGTGGAATTGACGGAGACTCAACTCTTCACGACTCGTGGTTTGGCTTTT
ATGCTGCCAGTGATGAGCATGATTATGAGCGGCTTATCTCTTTCAATTTATTGGATTGGCGCGTATCTAATTGATTCCGC
ACAAGTGGCTGATAAGTTGACCATATTTTCCAATATGGTTGTATTTTCATCCTACGCCATGCAGGTCGTGATGTCATTTA
TGATGTTGGCCATGATGTTTGTCCTGCTGCCGAGAGCAGCCGTGTCAGCTAAGCGTATTAATGAAGTGCTAGATACACGG
CCGATCATTGCCGAAGGTTCGCAAACCGAAGGAAAGCCAGGGGTGATCGGTGAGGTCGAGTTCAGAAATGTTAGTTTTAA
ATATCCTGGAGCAGCGGATTATGTTTTACATAATGTCAGTTTCTCCGTAAAGCAAGGTGAAACCGTGGCCTTTATCGGTT
CAACTGGCAGCGGCAAATCCACGCTCGTCAATCTGGTTCCACGCTTTTTTGACGCCACGGAGGGCGAGGTGCTCATTGAC
GGTGTGAATGTAAAGGAGTATGTCGAAGAAGCGTTATACAATAAAATAGGTTATGTTCCGCAAAAGGCGGTGCTGTTCAG
AGGCACGGTCAGTTCAAATGTGGGTTACGGTGAAAATGGAAAAGATACCACTACGGCGGATCAAATAAAAAAAGCTATTT
CCATTGCTCAGGGTACGGATTTTATTGAAGCGATGGAGGGGCAATATGATGCGGCCATTTCACAAGGCGGTACGAACTTG
TCAGGAGGGCAGAAACAAAGGTTATCTATTGCCCGCGCCGTCAGTAGAAACCCGGAAATATATATCTTTGACGATAGTTT
CTCCGCACTGGATTACAAAACAGACCGCGTGCTGCGTAGCGCACTAAAGAAAGAAACGGCAGGAGTTACAAGCATGATTG
TCGCGCAGCGTATCGGTACCATTATGGACGCTGACCAGATTATTGTACTCGACGATGGTAAAGTGGTCGGGAAAGGGACG
CATAAAGAGCTACTCACGACTTGCGAGGTTTACAAGGAAATTGCCATGTCTCAACTTAGTGAGGAGGAGCTTGTATCATG
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-292)

ABC transporter (ABC_tran)

(356-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

53.859

100

0.548

Multiple sequence alignment