Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACKTT9_RS20330 Genome accession   NZ_AP038372
Coordinates   4528570..4530435 (-) Length   621 a.a.
NCBI ID   WP_407867332.1    Uniprot ID   -
Organism   Paenibacillus sp. P36     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4523570..4535435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKTT9_RS20315 (PAENIP36_40020) - 4523580..4524803 (-) 1224 WP_407867330.1 response regulator -
  ACKTT9_RS20320 (PAENIP36_40030) - 4524781..4526469 (-) 1689 WP_407867331.1 sensor histidine kinase -
  ACKTT9_RS20325 (PAENIP36_40040) - 4526695..4528398 (-) 1704 WP_407873085.1 amylo-alpha-1,6-glucosidase -
  ACKTT9_RS20330 (PAENIP36_40050) rcrQ 4528570..4530435 (-) 1866 WP_407867332.1 ABC transporter ATP-binding protein Regulator
  ACKTT9_RS20335 (PAENIP36_40060) rcrP 4530432..4532192 (-) 1761 WP_407867333.1 ABC transporter ATP-binding protein Regulator
  ACKTT9_RS20340 (PAENIP36_40070) - 4532422..4532982 (-) 561 WP_407867334.1 hypothetical protein -
  ACKTT9_RS20345 (PAENIP36_40080) - 4533019..4533987 (-) 969 WP_407867335.1 helix-turn-helix transcriptional regulator -
  ACKTT9_RS20350 (PAENIP36_40090) - 4534134..4534613 (+) 480 WP_407867336.1 hypothetical protein -
  ACKTT9_RS20355 (PAENIP36_40100) - 4534691..4535167 (+) 477 WP_157320383.1 GyrI-like domain-containing protein -

Sequence

Protein


Download         Length: 621 a.a.        Molecular weight: 68074.00 Da        Isoelectric Point: 8.2179

>NTDB_id=111026 ACKTT9_RS20330 WP_407867332.1 4528570..4530435(-) (rcrQ) [Paenibacillus sp. P36]
MSENTHKRPAAMGGPGGMGGQGRMGAPVEKSKNFKATWIKLIRYCKSYLPAILIALVMAAAGTVLQIIGPNKIKDMTNEI
AKGLPAMIKGETVQGSIDIPAVVNIAWLLVFFYAGSTILSFAQSYIMATVTQRISKSMRTDISQKINRLPLKYFDRTSNG
DILSRVTNDVDAIGQTMNQSIGQLVTAIAMFVGSLIMMFYNSWILALTAVGSSLIGFALMMIIAKISQKFFIAQQAGLGS
INGHIEEIYSGHHVVKVYNGGIEAKKTFEKFNGDLYQSAWKSQFLSGLMMPLMGFIGNIGYVAVCVVGAVLAMNGSISFG
VIVAFMLYIRLFTQPLSQMAQAMNNLQRTAAAGERVFEFLDEQELTDESQKVKTLQNVKGNVEFKNVKFGYEPEKIIIHD
FSIQIKAGQKVAIVGPTGAGKTTIINLLMRFYELDGGEILLDGTPTDQVTRENVHQQFGIVLQDSWLFEGTIKENIVYSK
EGVTDEQVVNACKTVGLHHFIKALPDTYNTVFNDKASLSEGQKQLITIARAMIQNAPLLILDEATSSVDTRTERIVQTAM
EKLTEGRTSFVIAHRLSTIKNSDLILVMKGGDIIESGNHEDLLSKGGVYAELYNSQFEQLA

Nucleotide


Download         Length: 1866 bp        

>NTDB_id=111026 ACKTT9_RS20330 WP_407867332.1 4528570..4530435(-) (rcrQ) [Paenibacillus sp. P36]
ATGAGTGAAAACACACACAAAAGACCCGCAGCAATGGGGGGCCCCGGCGGTATGGGAGGCCAAGGCAGGATGGGGGCTCC
GGTTGAGAAATCGAAAAATTTCAAAGCGACTTGGATAAAATTGATTCGATATTGCAAGTCTTATCTTCCAGCTATCCTGA
TTGCACTTGTAATGGCTGCCGCCGGTACTGTGCTGCAGATTATTGGACCCAACAAAATCAAGGACATGACGAACGAGATT
GCCAAAGGGCTTCCGGCCATGATCAAAGGTGAGACGGTGCAGGGCAGTATTGACATACCCGCGGTTGTAAACATTGCCTG
GCTTCTTGTGTTTTTCTATGCAGGCTCAACGATCCTGAGTTTTGCGCAGAGTTATATCATGGCGACCGTAACACAAAGAA
TATCAAAATCAATGCGGACTGACATTTCTCAAAAAATCAACCGCTTGCCCCTCAAATATTTCGATAGGACGAGCAATGGC
GATATCCTCAGCCGCGTCACAAACGATGTTGATGCCATTGGGCAAACCATGAACCAGAGCATCGGACAGTTGGTGACCGC
AATTGCGATGTTTGTTGGCTCGCTTATTATGATGTTTTATAACAGTTGGATTCTGGCCTTGACCGCTGTAGGTTCCAGTC
TAATAGGTTTTGCTTTGATGATGATCATCGCAAAAATATCACAAAAATTCTTTATCGCTCAGCAAGCGGGGCTCGGAAGC
ATCAACGGACACATTGAGGAAATTTACTCTGGACACCATGTTGTGAAGGTTTATAACGGCGGCATAGAGGCAAAGAAAAC
CTTTGAAAAATTTAATGGAGATCTGTACCAAAGCGCATGGAAGTCGCAGTTTTTATCGGGCTTGATGATGCCGCTGATGG
GCTTCATCGGAAATATCGGGTATGTAGCCGTTTGCGTAGTAGGCGCAGTTTTAGCGATGAATGGAAGCATTTCTTTTGGC
GTCATTGTCGCATTCATGTTGTATATCCGCCTCTTTACACAGCCGCTTTCACAGATGGCACAGGCAATGAACAACCTGCA
ACGGACAGCAGCGGCAGGAGAGCGTGTCTTTGAATTTTTGGACGAGCAAGAGCTTACTGACGAGAGCCAAAAGGTAAAAA
CCTTGCAAAACGTGAAAGGCAATGTTGAGTTTAAGAACGTTAAATTTGGGTATGAGCCTGAAAAAATAATTATCCATGAT
TTCTCGATTCAGATAAAGGCAGGGCAAAAGGTAGCTATTGTCGGCCCGACTGGCGCAGGGAAGACCACGATCATCAATTT
GCTCATGCGGTTTTATGAGTTGGACGGCGGTGAAATCCTGCTGGATGGCACGCCGACTGATCAGGTGACGAGGGAAAATG
TCCATCAGCAATTTGGTATTGTATTGCAGGATTCTTGGCTGTTTGAAGGCACAATCAAAGAAAATATCGTTTACAGCAAG
GAAGGCGTTACGGATGAGCAAGTCGTCAATGCCTGTAAGACCGTAGGCTTACACCATTTCATTAAAGCTTTACCAGATAC
ATACAATACCGTTTTTAATGACAAAGCAAGTCTGTCTGAAGGGCAAAAGCAGCTTATTACCATTGCGCGCGCTATGATTC
AAAATGCTCCGCTGCTCATTTTGGACGAAGCAACCAGCTCAGTAGATACCCGAACCGAACGCATCGTGCAAACAGCAATG
GAAAAATTAACGGAAGGTAGAACCTCATTCGTGATCGCTCATAGGCTTTCGACCATCAAAAACTCCGATCTGATTCTGGT
CATGAAAGGCGGCGACATCATCGAAAGCGGCAATCATGAGGATTTGTTGTCGAAAGGTGGAGTCTACGCCGAACTCTATA
ACAGCCAATTTGAACAGCTGGCATAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(53-336)

ABC transporter (ABC_tran)

(399-546)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.188

94.203

0.51

Multiple sequence alignment