Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ACOCIC_RS09935 | Genome accession | NZ_CP184599 |
| Coordinates | 2096036..2096416 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain CQPMC-AB18 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2091036..2101416
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACOCIC_RS09905 (ACOCIC_09905) | kdsB | 2091939..2092700 (+) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| ACOCIC_RS09910 (ACOCIC_09910) | - | 2092712..2093692 (+) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| ACOCIC_RS09915 (ACOCIC_09915) | - | 2093704..2094045 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| ACOCIC_RS09920 (ACOCIC_09920) | - | 2094063..2094836 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| ACOCIC_RS09925 (ACOCIC_09925) | - | 2094874..2095482 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| ACOCIC_RS09930 (ACOCIC_09930) | - | 2095492..2096046 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| ACOCIC_RS09935 (ACOCIC_09935) | xcpV | 2096036..2096416 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ACOCIC_RS09940 (ACOCIC_09940) | xcpW | 2096416..2097117 (+) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ACOCIC_RS09945 (ACOCIC_09945) | gspK | 2097117..2098076 (+) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| ACOCIC_RS09950 (ACOCIC_09950) | - | 2098307..2098903 (+) | 597 | WP_000908452.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| ACOCIC_RS09955 (ACOCIC_09955) | ung | 2098954..2099667 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| ACOCIC_RS09960 (ACOCIC_09960) | - | 2099664..2100788 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ACOCIC_RS09965 (ACOCIC_09965) | tadA | 2100795..2101298 (+) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=1110035 ACOCIC_RS09935 WP_000836911.1 2096036..2096416(+) (xcpV) [Acinetobacter baumannii strain CQPMC-AB18]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=1110035 ACOCIC_RS09935 WP_000836911.1 2096036..2096416(+) (xcpV) [Acinetobacter baumannii strain CQPMC-AB18]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |