Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACOCJC_RS13520 Genome accession   NZ_CP184549
Coordinates   2736942..2737511 (-) Length   189 a.a.
NCBI ID   WP_000872879.1    Uniprot ID   A0A2S6DF07
Organism   Staphylococcus aureus strain SCTW2019145     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2731942..2742511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOCJC_RS13480 (ACOCJC_13480) - 2732416..2733024 (-) 609 WP_000020293.1 class I SAM-dependent methyltransferase -
  ACOCJC_RS13485 (ACOCJC_13485) rplL 2733199..2733567 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACOCJC_RS13490 (ACOCJC_13490) rplJ 2733610..2734110 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACOCJC_RS13495 (ACOCJC_13495) rplA 2734382..2735074 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACOCJC_RS13500 (ACOCJC_13500) rplK 2735282..2735704 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACOCJC_RS13505 (ACOCJC_13505) nusG 2735885..2736433 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACOCJC_RS13510 (ACOCJC_13510) secE 2736446..2736628 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACOCJC_RS13515 (ACOCJC_13515) rpmG 2736684..2736827 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACOCJC_RS13520 (ACOCJC_13520) sigH 2736942..2737511 (-) 570 WP_000872879.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACOCJC_RS13525 (ACOCJC_13525) - 2737593..2738117 (-) 525 WP_000664738.1 NYN domain-containing protein -
  ACOCJC_RS13530 (ACOCJC_13530) rlmB 2738117..2738863 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACOCJC_RS13535 (ACOCJC_13535) - 2738871..2739275 (-) 405 WP_000370181.1 Mini-ribonuclease 3 -
  ACOCJC_RS13540 (ACOCJC_13540) cysS 2739268..2740668 (-) 1401 WP_000631961.1 cysteine--tRNA ligase -
  ACOCJC_RS13545 (ACOCJC_13545) cysE 2740652..2741299 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.02 Da        Isoelectric Point: 9.7681

>NTDB_id=1109339 ACOCJC_RS13520 WP_000872879.1 2736942..2737511(-) (sigH) [Staphylococcus aureus strain SCTW2019145]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1109339 ACOCJC_RS13520 WP_000872879.1 2736942..2737511(-) (sigH) [Staphylococcus aureus strain SCTW2019145]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S6DF07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment