Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACOCJC_RS08540 Genome accession   NZ_CP184549
Coordinates   1693374..1694060 (+) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SCTW2019145     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1688374..1699060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOCJC_RS08505 (ACOCJC_08505) yqeH 1688901..1690001 (+) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -
  ACOCJC_RS08510 (ACOCJC_08510) aroE 1690015..1690821 (+) 807 WP_000666746.1 shikimate dehydrogenase -
  ACOCJC_RS08515 (ACOCJC_08515) yhbY 1690825..1691115 (+) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  ACOCJC_RS08520 (ACOCJC_08520) nadD 1691118..1691687 (+) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACOCJC_RS08525 (ACOCJC_08525) yqeK 1691677..1692261 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACOCJC_RS08530 (ACOCJC_08530) rsfS 1692262..1692615 (+) 354 WP_001088020.1 ribosome silencing factor -
  ACOCJC_RS08535 (ACOCJC_08535) - 1692618..1693334 (+) 717 WP_000084838.1 class I SAM-dependent DNA methyltransferase -
  ACOCJC_RS08540 (ACOCJC_08540) comEA 1693374..1694060 (+) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  ACOCJC_RS08545 (ACOCJC_08545) - 1694152..1694613 (+) 462 WP_420228333.1 ComE operon protein 2 -
  ACOCJC_RS08550 (ACOCJC_08550) comEC 1694618..1696819 (+) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACOCJC_RS08555 (ACOCJC_08555) holA 1696876..1697850 (+) 975 WP_084578698.1 DNA polymerase III subunit delta -
  ACOCJC_RS08560 (ACOCJC_08560) rpsT 1697895..1698146 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=1109317 ACOCJC_RS08540 WP_001825349.1 1693374..1694060(+) (comEA) [Staphylococcus aureus strain SCTW2019145]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1109317 ACOCJC_RS08540 WP_001825349.1 1693374..1694060(+) (comEA) [Staphylococcus aureus strain SCTW2019145]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment