Detailed information NTG0110900

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: ID09_RS11170
• Genome accession: NZ_CP008921
• Coordinates: 2261811..2262905 (+)
• Length: 364 a.a.
• NCBI ID: WP_012028050.1
• Uniprot ID: A0A0H3N2H6
• Organism: Streptococcus suis 6407
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2256811..2267905

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ID09_RS11140 (ID09_11430)	-	2257441..2257767 (-)	327	WP_024381297.1	phage head closure protein	-
ID09_RS11145 (ID09_11435)	-	2257841..2258041 (-)	201	WP_024381298.1	helix-turn-helix transcriptional regulator	-
ID09_RS11150 (ID09_11440)	-	2258248..2258832 (+)	585	WP_024381299.1	helix-turn-helix domain-containing protein	-
ID09_RS11155 (ID09_11445)	-	2259125..2260129 (+)	1005	WP_024381300.1	virulence RhuM family protein	-
ID09_RS11160 (ID09_11450)	-	2260359..2261287 (+)	929	Protein_2187	tyrosine-type recombinase/integrase	-
ID09_RS11165 (ID09_11455)	yaaA	2261425..2261808 (+)	384	WP_012028049.1	S4 domain-containing protein YaaA	-
ID09_RS11170 (ID09_11460)	recF	2261811..2262905 (+)	1095	WP_012028050.1	DNA replication/repair protein RecF	Machinery gene
ID09_RS11175 (ID09_11465)	guaB	2263181..2264662 (-)	1482	WP_024378802.1	IMP dehydrogenase	-
ID09_RS11180 (ID09_11470)	trpS	2264894..2265919 (-)	1026	WP_024381302.1	tryptophan--tRNA ligase	-
ID09_RS11185 (ID09_11475)	-	2266274..2267146 (+)	873	WP_024381303.1	YitT family protein	-

Sequence

Protein

• Length: 364 a.a.
• Molecular weight: 42188.24 Da
• Isoelectric Point: 6.9173

>NTDB_id=110900 ID09_RS11170 WP_012028050.1 2261811..2262905(+) (recF) [Streptococcus suis 6407]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIELTDDVNLIDKFLT
ELEKSRKRDLFKKNTGVGPHRDDVAFFINGMNAHYASQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide

• Length: 1095 bp

>NTDB_id=110900 ID09_RS11170 WP_012028050.1 2261811..2262905(+) (recF) [Streptococcus suis 6407]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGACGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAGCCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCTGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACCAGACCTCAATCGAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAACTAGAAAAGTCTCGTAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGCTAGCCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTAGCTGAAATTG
AGCTGATGAAAGAAGTCACACGAGAGTACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTGGATAATAATCGTCAA
ATCAAACTATTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: A0A0H3N2H6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	70.36	99.176	0.698
recF	Bacillus subtilis subsp. subtilis str. 168	43.514	100	0.442