Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   ID09_RS09255 Genome accession   NZ_CP008921
Coordinates   1888293..1889333 (-) Length   346 a.a.
NCBI ID   WP_024381967.1    Uniprot ID   -
Organism   Streptococcus suis 6407     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1883293..1894333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID09_RS12655 - 1883814..1883931 (-) 118 Protein_1799 translation initiation factor IF-2 N-terminal domain-containing protein -
  ID09_RS09220 (ID09_09465) - 1883949..1884257 (-) 309 WP_002942377.1 YlxQ-related RNA-binding protein -
  ID09_RS09225 (ID09_09470) rnpM 1884244..1884540 (-) 297 WP_002942375.1 RNase P modulator RnpM -
  ID09_RS09230 (ID09_09475) nusA 1884557..1885699 (-) 1143 WP_024381966.1 transcription termination factor NusA -
  ID09_RS09235 (ID09_09480) rimP 1885773..1886243 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  ID09_RS09245 (ID09_09485) trmB 1886814..1887452 (-) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ID09_RS09250 (ID09_09490) ccrZ 1887449..1888243 (-) 795 WP_002942360.1 cell cycle regulator CcrZ -
  ID09_RS09255 (ID09_09495) pptB 1888293..1889333 (-) 1041 WP_024381967.1 ABC transporter permease Regulator
  ID09_RS09260 (ID09_09500) pptA 1889330..1890064 (-) 735 WP_002942356.1 ABC transporter ATP-binding protein Regulator
  ID09_RS09265 (ID09_09505) - 1890127..1890540 (+) 414 WP_012027752.1 HIT family protein -
  ID09_RS09270 (ID09_09510) - 1890542..1890844 (+) 303 WP_024381968.1 hypothetical protein -
  ID09_RS09275 (ID09_09515) - 1890953..1892146 (-) 1194 WP_024381969.1 LCP family protein -
  ID09_RS09280 (ID09_09520) - 1892143..1892670 (-) 528 WP_024381970.1 GNAT family N-acetyltransferase -
  ID09_RS09285 (ID09_09525) tsaE 1892663..1893103 (-) 441 WP_024376437.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 40170.56 Da        Isoelectric Point: 10.2268

>NTDB_id=110886 ID09_RS09255 WP_024381967.1 1888293..1889333(-) (pptB) [Streptococcus suis 6407]
MKELFQQRRLDFLNRCSKYLRYVLNDHFVLVLMVLLGFLSLQYRQLLLSFPENPLPIVFVVIAISLLVLVSGRIATYLEE
ADQIFLLTKEKDILQGLEVAARRTVLFWSSIQVVVQLVLLPIYLKLGLPVWMIVAGLLTLLVLKCLFVKRQLVAYQSQGV
LDWSKAIQDEQKRKQSILRFFALFTTVKGISTTVKSRSYLNGILRLVKSRQTWFYLYLRAFLRSGDYLGLTIRLLLLAIL
SLFAIEESWLSIGLVLVFHYLLVFQLLGLYKHYDYQYVTQLYPLEKDSKKIGLQNLLRVILYSLLLVKLGFALLFSKENA
MVVVLLLVGIFLHEIYLPLKLKKLID

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=110886 ID09_RS09255 WP_024381967.1 1888293..1889333(-) (pptB) [Streptococcus suis 6407]
ATGAAAGAATTGTTTCAACAACGCCGACTAGATTTTTTAAATCGTTGTTCCAAGTATCTGCGCTATGTTCTGAATGACCA
TTTTGTTTTGGTTCTCATGGTTTTATTAGGCTTTTTGAGTTTGCAATACCGTCAATTATTGTTGTCATTCCCTGAGAATC
CGTTGCCGATTGTTTTTGTTGTTATTGCAATCAGTCTACTGGTACTAGTGTCCGGAAGAATTGCGACTTATCTAGAAGAA
GCTGATCAAATCTTCCTATTGACCAAGGAAAAAGACATTCTGCAAGGACTCGAGGTTGCAGCCAGACGCACGGTCTTGTT
TTGGTCCTCTATACAGGTGGTGGTTCAGCTTGTTTTGTTACCAATCTATTTGAAACTGGGTTTACCGGTGTGGATGATTG
TAGCTGGTCTTCTTACTTTGTTGGTTTTAAAATGTCTTTTTGTCAAGCGCCAATTAGTGGCTTATCAGTCACAGGGAGTA
TTGGACTGGTCTAAGGCTATTCAAGATGAACAAAAAAGGAAACAGTCTATTTTACGTTTCTTTGCCTTATTTACGACGGT
TAAAGGAATCAGTACGACTGTTAAATCGAGAAGTTATCTCAATGGAATCTTGCGTCTTGTCAAGTCGAGACAGACTTGGT
TTTATCTCTACTTACGGGCTTTCTTGCGTTCAGGAGACTACTTGGGCTTGACGATACGTCTACTGTTGTTGGCGATTTTG
TCCCTATTTGCCATTGAAGAATCGTGGTTATCCATCGGCCTAGTTTTAGTCTTTCATTATTTGCTTGTCTTCCAGTTGTT
GGGGCTTTACAAGCATTATGATTATCAATATGTAACACAACTGTATCCTCTGGAGAAAGATTCCAAGAAAATCGGTCTTC
AGAATTTGCTTAGAGTGATTTTATATAGTCTATTACTGGTGAAATTGGGCTTTGCTCTGTTATTTTCTAAAGAGAATGCG
ATGGTAGTCGTCTTACTTCTCGTAGGGATTTTCTTGCATGAAATATATTTGCCTCTAAAATTAAAAAAATTGATTGACTA
A

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(153-329)

Bacterial ABC transporter protein EcsB (EcsB)

(2-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

46.023

100

0.468
  pptB Streptococcus thermophilus LMD-9

45.17

100

0.46

Multiple sequence alignment