Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   ID09_RS04840 Genome accession   NZ_CP008921
Coordinates   993564..994232 (-) Length   222 a.a.
NCBI ID   WP_024381849.1    Uniprot ID   A0ABV2ERC1
Organism   Streptococcus suis 6407     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 988564..999232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID09_RS04820 (ID09_04945) - 989213..989734 (+) 522 WP_024387749.1 AAA family ATPase -
  ID09_RS04825 (ID09_04950) xerS 989902..990972 (+) 1071 WP_024381847.1 tyrosine recombinase XerS Machinery gene
  ID09_RS04830 (ID09_04955) - 991042..992550 (-) 1509 WP_024390639.1 phosphoglucomutase -
  ID09_RS04835 (ID09_04960) - 992626..993567 (-) 942 WP_002935009.1 sensor histidine kinase -
  ID09_RS04840 (ID09_04965) braR 993564..994232 (-) 669 WP_024381849.1 response regulator transcription factor Regulator
  ID09_RS04845 (ID09_04970) - 994271..994477 (-) 207 WP_371318546.1 type II toxin-antitoxin system RelE family toxin -
  ID09_RS04850 (ID09_04975) relB 994518..994757 (-) 240 WP_024381851.1 type II toxin-antitoxin system RelB family antitoxin -
  ID09_RS04855 (ID09_04980) - 994847..996817 (-) 1971 WP_024381852.1 ABC transporter permease -
  ID09_RS04860 (ID09_04985) - 996818..997570 (-) 753 WP_024381853.1 ABC transporter ATP-binding protein -
  ID09_RS04865 (ID09_04990) - 997579..997968 (-) 390 WP_024381854.1 NisI/SpaI family lantibiotic immunity lipoprotein -
  ID09_RS12165 - 997981..998121 (-) 141 WP_032505027.1 hypothetical protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25564.39 Da        Isoelectric Point: 4.7792

>NTDB_id=110857 ID09_RS04840 WP_024381849.1 993564..994232(-) (braR) [Streptococcus suis 6407]
MMKKEKIYIVEDDEMIVQLLKQHLGKSYQVESVQNFRAVSQEVAEIKPDLVLMDISLPYYNGFYWTTEIRKTMTMPIIFI
SSSDDEMNAVMAMNMGGDDFVSKPFSLGILDAKIGAFLRRVNQFSKSTDLSIDQFQLSLDGRFSNESEQVQLSPTETKIL
SALLERQGQIVSKEELLEKLWENEEFIDQNTLNVNMTRLRKKVSEVGFERIHTVRGVGYLVK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=110857 ID09_RS04840 WP_024381849.1 993564..994232(-) (braR) [Streptococcus suis 6407]
ATGATGAAAAAAGAGAAGATTTATATTGTTGAAGACGATGAGATGATTGTCCAGCTCTTGAAGCAGCATTTGGGAAAATC
GTATCAGGTGGAAAGTGTGCAGAATTTCCGAGCTGTCAGTCAGGAAGTTGCTGAAATCAAACCAGACTTGGTGCTGATGG
ACATTAGCCTGCCTTATTACAACGGTTTTTACTGGACGACAGAAATCCGTAAAACCATGACCATGCCCATTATCTTTATT
TCTTCTAGCGATGATGAGATGAATGCGGTCATGGCCATGAACATGGGTGGCGATGATTTTGTGTCCAAGCCCTTTTCTCT
GGGAATTTTGGATGCCAAAATCGGTGCCTTTCTGCGTCGGGTCAATCAATTCAGCAAATCAACTGATTTGTCAATTGACC
AGTTCCAGCTTAGTTTGGACGGGCGATTTTCAAATGAATCGGAACAGGTTCAATTATCTCCTACGGAAACCAAGATTTTG
TCCGCCTTACTAGAACGACAAGGGCAGATTGTTAGCAAGGAAGAACTCTTGGAAAAACTCTGGGAAAATGAAGAATTTAT
CGATCAGAATACGCTCAATGTAAACATGACCAGACTGCGTAAGAAGGTGAGCGAAGTCGGGTTTGAACGAATTCATACCG
TTCGTGGCGTGGGGTACTTGGTCAAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.273

99.099

0.468

Multiple sequence alignment