Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   ID09_RS04040 Genome accession   NZ_CP008921
Coordinates   845882..849535 (+) Length   1217 a.a.
NCBI ID   WP_024390763.1    Uniprot ID   -
Organism   Streptococcus suis 6407     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 840882..854535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID09_RS04035 (ID09_04090) rexB 842616..845882 (+) 3267 WP_024381782.1 ATP-dependent nuclease subunit B Machinery gene
  ID09_RS04040 (ID09_04095) rexA 845882..849535 (+) 3654 WP_024390763.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  ID09_RS04045 (ID09_04100) plsY 849545..850189 (-) 645 WP_024381784.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  ID09_RS04050 (ID09_04105) parE 850332..852275 (+) 1944 WP_024381785.1 DNA topoisomerase IV subunit B -
  ID09_RS04055 (ID09_04110) - 852305..853117 (+) 813 WP_024381786.1 hypothetical protein -
  ID09_RS11555 - 853136..853297 (+) 162 WP_228380945.1 YkvA family protein -
  ID09_RS04065 (ID09_04120) - 853300..853752 (+) 453 WP_012775065.1 hypothetical protein -

Sequence

Protein


Download         Length: 1217 a.a.        Molecular weight: 139934.15 Da        Isoelectric Point: 5.0904

>NTDB_id=110852 ID09_RS04040 WP_024390763.1 845882..849535(+) (rexA) [Streptococcus suis 6407]
MAFEQFLSAEEIKAVQLAEANSDKQQKRTPEQIESIYTHGQNVLVSASAGSGKTFVMVQRILDKLKRGVGIDQLFISTFT
VKAAGELKERIEKNLNETIAETTDMDLRRHLSAQLADLTKADIGTMDSFTQKLVTTYGYSLGISPQFRILQDETEKASLK
KEVFDQLFADYLEQDENGEFRRLVRNFSGNRKDNSGFRQVVYQVHDFSQSTSSPTKWLKEQAVQADLYSQERIEQILEQG
FKEKVLDKLYQATDFFRYHVEWGRNDFGSTKYFSSVEDVIELLTGIEHLESKQLMERVERILLINDQSRGKGLTNANRPK
DEHLIAFKEEYNAGKSQLISGLRDLGQEVYELTLLKDYQDQAVPLLILLRDFVLDFSQAYLDVKIKEAAFEFGDIGHFAI
RILEENADIRQFFQEKYHEVMVDEYQDNNHSQERMLDLLSNGHNRFMVGDIKQSIYRFRQADPMIFQEKFELYQENPQAG
KLILLKENFRSQIEVLEATNAIFTRLMDRQVGEIKYDDTHSLVAGSPGQKIAQPKHEMEYLIYDQQDSANSSTDAEEETP
LTAGEIEVVAKEIIRLHNEEGADFKDITLLVQKRTHNDLIMSIFEKHGIPIVADGGAASYLQSLEVMIMLDTLRVINNPL
NDYALVALLKSPMFRFDEDELTRISLQAGTGFFYQKMELSVANVGQHSELIHGELKKKIKDFLSILENWRAYAKLHSIYV
LIWKIFNEKFYYDYVGALPNGSKRQANLYALGLRANQFEKTGYKGLSRFIAMIDRALANDKDLADVQEFLPQNAVQLMTI
HKSKGLEFKYVFLMNIDKRFNLEDHYQSVIISRKNGLGIQYLADMKDKVNSPLPQVRVLMNTLPYQNNLQELKIANLSEQ
MRLLYVALTRAEKKLYLVGKGNADKLAEKYDGKKENGVLAQSTRESMATFQDWILAIDEAFSGEDLHFKKVFVTDEDLTE
EKIGKLTLKSKLEDTSLKDIRQSEDIAQALDQLSSVQELNERYKAAIELPSLRTPSQIKKLYELVLEQEGMEVMEKYQPK
RTFNLPDFSKKPKITGAQVGSAVHELMQRLDLSWLVTEDTVREALEAVHAEQAVKDKINVQMILDFIDTDLGREILANTD
KLHREAPFASLQTDSLSQEQFVLRGIIDGYLLYDDHIVLFDYKTDKYDQPSQLSQRYQAQMQLYAEALKKAYKIDRVDCH
LILLGGERIEVVEVKVN

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=110852 ID09_RS04040 WP_024390763.1 845882..849535(+) (rexA) [Streptococcus suis 6407]
ATGGCTTTTGAACAATTTTTAAGCGCGGAAGAAATCAAGGCTGTGCAGCTGGCGGAAGCCAATTCTGATAAGCAACAAAA
ACGCACACCTGAGCAGATTGAATCCATCTACACGCACGGTCAGAATGTTCTGGTCTCTGCATCGGCTGGGTCAGGTAAGA
CCTTCGTTATGGTTCAACGGATTTTGGATAAGTTGAAGCGTGGTGTGGGAATCGACCAGCTCTTTATCTCGACCTTTACA
GTCAAGGCGGCTGGTGAATTGAAGGAGCGGATCGAGAAAAATCTCAATGAAACCATTGCGGAGACGACCGATATGGACTT
GCGTCGGCATTTGTCTGCCCAGTTGGCGGATTTGACCAAGGCGGATATTGGGACCATGGACTCCTTTACGCAGAAATTGG
TAACGACTTACGGTTATAGCCTTGGAATTTCTCCGCAGTTTCGGATTTTACAGGATGAGACAGAAAAAGCGAGTCTGAAA
AAAGAGGTTTTTGACCAGCTCTTTGCAGATTATCTTGAACAGGATGAAAATGGGGAATTTCGTAGATTGGTTCGCAATTT
TTCGGGCAACCGTAAGGATAACAGTGGTTTCCGTCAGGTTGTTTATCAGGTACATGATTTTAGCCAATCGACGAGCAGTC
CAACTAAATGGCTGAAAGAGCAGGCTGTTCAAGCTGATTTGTACAGTCAAGAGCGTATAGAGCAGATCTTAGAGCAAGGC
TTTAAGGAAAAAGTGTTAGACAAGCTCTATCAAGCTACAGATTTCTTCCGCTACCATGTGGAATGGGGCAGAAATGACTT
TGGTTCTACTAAGTATTTTTCAAGCGTTGAAGATGTAATCGAATTGTTAACTGGTATAGAGCATCTGGAATCCAAGCAGT
TGATGGAACGGGTTGAAAGAATCCTTCTCATCAACGACCAGTCCAGAGGAAAAGGCCTGACCAATGCCAATCGACCAAAA
GATGAGCATTTGATAGCCTTTAAAGAAGAATACAATGCTGGCAAGAGCCAGCTTATCTCAGGATTACGCGATTTGGGTCA
GGAAGTTTATGAATTAACCCTGCTGAAAGACTATCAGGATCAAGCTGTGCCCTTGCTGATATTATTACGTGACTTTGTCT
TGGATTTTTCGCAGGCTTATCTGGATGTCAAAATCAAGGAAGCAGCTTTTGAATTTGGCGATATTGGGCATTTCGCTATT
CGCATTTTAGAAGAAAATGCGGACATTCGCCAGTTTTTCCAAGAAAAATACCACGAAGTCATGGTGGACGAGTACCAGGA
TAACAACCATAGCCAAGAGCGAATGTTGGACCTGCTGTCTAACGGTCACAACCGCTTTATGGTGGGCGACATTAAGCAGT
CCATCTATCGATTCCGTCAGGCGGATCCGATGATTTTCCAAGAGAAATTTGAATTGTATCAGGAAAATCCTCAGGCAGGG
AAATTGATTTTGCTCAAGGAAAACTTCCGCAGTCAGATTGAGGTCTTGGAGGCAACAAATGCTATTTTCACGCGCCTGAT
GGACCGTCAAGTAGGGGAAATCAAGTATGACGACACCCACAGTCTGGTGGCTGGTAGTCCTGGTCAAAAAATTGCCCAGC
CCAAGCATGAGATGGAATACTTGATTTATGACCAGCAGGATAGCGCAAACTCATCAACGGATGCTGAGGAGGAAACACCT
CTGACTGCTGGTGAAATTGAGGTCGTTGCAAAAGAGATTATTCGTCTTCACAATGAAGAAGGAGCAGACTTCAAGGACAT
CACTCTCTTGGTACAAAAGCGGACGCACAATGACCTCATTATGTCCATTTTTGAAAAACATGGGATTCCAATTGTGGCAG
ATGGCGGAGCAGCCTCCTATCTGCAATCTTTAGAAGTCATGATTATGCTGGATACCTTGAGGGTTATCAATAATCCACTC
AATGACTATGCCTTGGTTGCCCTGCTTAAATCACCTATGTTCCGATTCGATGAGGATGAACTGACACGGATTTCCTTGCA
GGCTGGGACAGGTTTCTTTTACCAGAAAATGGAATTATCTGTTGCAAATGTTGGACAGCATTCAGAATTGATTCATGGCG
AGTTGAAGAAGAAAATCAAGGATTTCTTGTCTATCTTAGAAAACTGGCGTGCCTATGCCAAACTGCATTCTATTTATGTC
CTGATCTGGAAGATTTTCAATGAAAAATTCTACTATGACTATGTCGGTGCTCTTCCAAATGGCAGCAAGCGTCAAGCCAA
TCTCTATGCACTAGGTCTGCGTGCCAACCAGTTTGAAAAAACAGGCTACAAGGGTTTGTCCCGCTTCATCGCCATGATTG
ACCGGGCCTTAGCAAATGACAAGGACTTGGCAGATGTACAAGAGTTTCTACCGCAAAATGCTGTACAGCTTATGACCATT
CATAAGTCAAAAGGTCTGGAGTTCAAATATGTCTTCCTCATGAACATCGATAAGCGATTCAACTTGGAAGACCATTACCA
GTCAGTCATTATCAGCCGGAAAAATGGTCTAGGTATCCAATATTTAGCGGATATGAAAGATAAGGTAAATAGCCCATTAC
CTCAGGTGCGAGTCTTAATGAACACACTTCCTTATCAAAATAATCTCCAAGAGCTAAAAATTGCCAATCTTTCAGAACAA
ATGCGGTTGCTTTATGTTGCACTAACGCGTGCCGAGAAGAAGCTGTATCTGGTTGGAAAGGGCAATGCTGACAAGTTAGC
TGAAAAATACGATGGTAAAAAGGAAAATGGCGTACTTGCTCAATCAACTCGTGAAAGCATGGCGACCTTCCAAGACTGGA
TTCTAGCCATTGATGAGGCCTTCTCAGGAGAAGACTTGCACTTCAAGAAAGTTTTTGTGACGGATGAGGATTTGACAGAG
GAGAAGATTGGTAAACTTACATTGAAAAGTAAGCTAGAAGACACCAGCCTTAAAGATATTCGTCAATCAGAAGACATCGC
CCAGGCTTTGGACCAGTTGTCTTCTGTCCAAGAGTTGAACGAACGCTATAAGGCTGCTATAGAATTGCCAAGTTTACGCA
CTCCAAGTCAAATCAAGAAACTCTATGAGCTTGTCTTGGAACAAGAAGGCATGGAAGTTATGGAAAAATACCAGCCAAAA
CGGACCTTCAACTTGCCAGATTTCTCCAAGAAACCAAAAATCACTGGAGCCCAAGTTGGTTCAGCAGTCCATGAACTCAT
GCAACGCTTGGATCTGTCTTGGTTGGTGACAGAAGATACGGTAAGAGAGGCCCTAGAAGCTGTTCATGCTGAGCAAGCGG
TTAAAGATAAAATCAATGTTCAGATGATTTTGGATTTCATTGATACAGACTTAGGAAGAGAAATTCTAGCCAATACGGAC
AAACTCCACCGAGAAGCTCCATTTGCAAGTTTGCAGACAGATTCTTTGTCACAGGAACAATTTGTCCTTCGTGGGATTAT
CGATGGCTACCTACTATATGATGATCATATTGTCCTCTTTGATTATAAGACAGACAAATACGACCAACCAAGCCAACTCA
GTCAACGTTACCAAGCTCAAATGCAACTCTATGCGGAGGCATTGAAAAAAGCCTACAAGATAGATCGTGTAGACTGCCAT
TTGATTTTGCTTGGTGGGGAAAGAATTGAAGTGGTCGAAGTCAAGGTAAACTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1037-1192)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-471)

UvrD-like helicase C-terminal domain (UvrD_C)

(483-897)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

51.758

100

0.52

Multiple sequence alignment