Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACN079_RS24090 Genome accession   NZ_CP184478
Coordinates   5375678..5376313 (+) Length   211 a.a.
NCBI ID   WP_420232152.1    Uniprot ID   -
Organism   Pseudomonas sp. ABY48     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5370678..5381313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN079_RS24070 (ACN079_24070) - 5370810..5371742 (+) 933 WP_420232148.1 ABC transporter ATP-binding protein -
  ACN079_RS24075 (ACN079_24075) - 5371745..5372524 (+) 780 WP_420232149.1 ABC transporter permease -
  ACN079_RS24080 (ACN079_24080) - 5372676..5373191 (-) 516 WP_420232150.1 DUF2062 domain-containing protein -
  ACN079_RS24085 (ACN079_24085) comA 5373336..5375582 (+) 2247 WP_420232151.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACN079_RS24090 (ACN079_24090) exbB 5375678..5376313 (+) 636 WP_420232152.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACN079_RS24095 (ACN079_24095) - 5376310..5376738 (+) 429 WP_013694002.1 ExbD/TolR family protein -
  ACN079_RS24100 (ACN079_24100) lpxK 5376738..5377748 (+) 1011 WP_420232153.1 tetraacyldisaccharide 4'-kinase -
  ACN079_RS24105 (ACN079_24105) - 5377772..5377957 (+) 186 WP_003179363.1 Trm112 family protein -
  ACN079_RS24110 (ACN079_24110) kdsB 5377954..5378718 (+) 765 WP_420232154.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACN079_RS24115 (ACN079_24115) - 5378718..5379182 (+) 465 WP_420232155.1 low molecular weight protein-tyrosine-phosphatase -
  ACN079_RS24120 (ACN079_24120) murB 5379179..5380198 (+) 1020 WP_420232156.1 UDP-N-acetylmuramate dehydrogenase -
  ACN079_RS24125 (ACN079_24125) - 5380463..5380933 (+) 471 WP_420232157.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22840.03 Da        Isoelectric Point: 8.0840

>NTDB_id=1108427 ACN079_RS24090 WP_420232152.1 5375678..5376313(+) (exbB) [Pseudomonas sp. ABY48]
MWELVKSGGWMMLPIILSSIVALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEVLAAGLAN
SKHGREIMKECIEEAAARVIHELERYISTLGTIAAMSPLLGLLGTVLGMIDIFSAFTGAGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLVGGKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1108427 ACN079_RS24090 WP_420232152.1 5375678..5376313(+) (exbB) [Pseudomonas sp. ABY48]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGTGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGCCGCGTGACCCCGGAGCATCTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAACTGAACAAGGACAAACTCAAGGAACTGCGGGCCAGCTCGCCGTTGGGGGAAGTCCTCGCCGCCGGCCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATCCATGAACTGGAGCGCTATAT
CAGCACCCTGGGGACCATCGCCGCCATGTCCCCCCTGTTGGGCCTGCTGGGTACGGTGCTGGGCATGATCGACATCTTCA
GCGCGTTTACCGGCGCCGGCATGACCACCAACGCCGCAGTACTGGCGGGGGGCATTTCCAAAGCCTTGATCACCACCGCC
GCCGGGCTGATGGTGGGTATTCCGGCCGTGTTCTTCCATCGGTTCCTGCAACGCCGCGTCGACGAGTTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAGGTGGTGCAGGGTGACCGTGATGTGGACCTGGTCGGGGGCAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.81

99.526

0.834

Multiple sequence alignment