Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ACOAJ7_RS12785 | Genome accession | NZ_CP184249 |
| Coordinates | 2802691..2803530 (-) | Length | 279 a.a. |
| NCBI ID | WP_180741896.1 | Uniprot ID | A0A7V8TCD9 |
| Organism | Pectobacterium brasiliense strain CSR3 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2797691..2808530
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACOAJ7_RS12755 (ACOAJ7_12755) | dbpA | 2797793..2799175 (-) | 1383 | WP_180741899.1 | ATP-dependent RNA helicase DbpA | - |
| ACOAJ7_RS12760 (ACOAJ7_12760) | - | 2799297..2800031 (-) | 735 | WP_420064271.1 | molybdate ABC transporter substrate-binding protein | - |
| ACOAJ7_RS12765 (ACOAJ7_12765) | - | 2800028..2800195 (-) | 168 | Protein_2511 | ABC transporter ATP-binding protein | - |
| ACOAJ7_RS12770 (ACOAJ7_12770) | - | 2800222..2800704 (-) | 483 | Protein_2512 | ABC transporter substrate-binding protein | - |
| ACOAJ7_RS12775 (ACOAJ7_12775) | - | 2801093..2802118 (+) | 1026 | WP_180741897.1 | LLM class flavin-dependent oxidoreductase | - |
| ACOAJ7_RS12780 (ACOAJ7_12780) | ypdK | 2802474..2802548 (+) | 75 | WP_099606229.1 | membrane protein YpdK | - |
| ACOAJ7_RS12785 (ACOAJ7_12785) | pilD | 2802691..2803530 (-) | 840 | WP_180741896.1 | prepilin peptidase | Machinery gene |
| ACOAJ7_RS12790 (ACOAJ7_12790) | - | 2803639..2804385 (-) | 747 | WP_420064272.1 | type II secretion system protein N | - |
| ACOAJ7_RS12795 (ACOAJ7_12795) | gspM | 2804375..2804869 (-) | 495 | WP_420064273.1 | type II secretion system protein GspM | - |
| ACOAJ7_RS12800 (ACOAJ7_12800) | gspL | 2804866..2806143 (-) | 1278 | WP_420064274.1 | type II secretion system protein GspL | - |
| ACOAJ7_RS12805 (ACOAJ7_12805) | gspK | 2806140..2807126 (-) | 987 | WP_420064275.1 | type II secretion system minor pseudopilin GspK | - |
| ACOAJ7_RS12810 (ACOAJ7_12810) | gspJ | 2807123..2807773 (-) | 651 | WP_420064276.1 | type II secretion system minor pseudopilin GspJ | - |
| ACOAJ7_RS12815 (ACOAJ7_12815) | gspI | 2807773..2808138 (-) | 366 | WP_180741890.1 | type II secretion system minor pseudopilin GspI | - |
Sequence
Protein
Download Length: 279 a.a. Molecular weight: 31146.08 Da Isoelectric Point: 7.5535
>NTDB_id=1108055 ACOAJ7_RS12785 WP_180741896.1 2802691..2803530(-) (pilD) [Pectobacterium brasiliense strain CSR3]
MDDLREFAQVFPAWWYGALGVLGLIVGSFLNVVIYRLPIMLERRWRQDIDLQTGVTDAEQATRYNLCWPPSSCPHCQQSI
AVKDNIPLFSWLWLRGRSRCCHQPVSVQYPLVEVITMLAFLAAGLLWLPSMALCAALILLSFLVVLTVIDIKTLLLPDVL
TLSLLWIGLLFNLSETFVPLRDAVVGAMAGYLSLWLLYWVFKYTTGKDALGYGDFKLLSALGAWLGWQALPNLVLVAALS
GLVMTLIWRGLRKEDTTKPLAFGPWLAVGGVFSVIMNGL
MDDLREFAQVFPAWWYGALGVLGLIVGSFLNVVIYRLPIMLERRWRQDIDLQTGVTDAEQATRYNLCWPPSSCPHCQQSI
AVKDNIPLFSWLWLRGRSRCCHQPVSVQYPLVEVITMLAFLAAGLLWLPSMALCAALILLSFLVVLTVIDIKTLLLPDVL
TLSLLWIGLLFNLSETFVPLRDAVVGAMAGYLSLWLLYWVFKYTTGKDALGYGDFKLLSALGAWLGWQALPNLVLVAALS
GLVMTLIWRGLRKEDTTKPLAFGPWLAVGGVFSVIMNGL
Nucleotide
Download Length: 840 bp
>NTDB_id=1108055 ACOAJ7_RS12785 WP_180741896.1 2802691..2803530(-) (pilD) [Pectobacterium brasiliense strain CSR3]
GTGGACGATTTAAGGGAATTTGCGCAGGTGTTTCCAGCATGGTGGTATGGTGCGCTGGGCGTATTGGGATTGATTGTTGG
CAGCTTTCTGAACGTAGTGATTTATCGTTTGCCGATTATGTTGGAACGGCGCTGGCGGCAAGACATCGATCTGCAAACCG
GCGTAACGGATGCCGAGCAGGCTACGCGCTATAACCTGTGCTGGCCGCCTTCGTCTTGCCCACACTGCCAGCAGAGTATT
GCGGTGAAGGATAACATTCCGTTATTCAGTTGGCTGTGGCTGCGCGGTCGTTCCCGATGCTGTCATCAACCGGTGTCTGT
GCAGTATCCGCTGGTGGAAGTCATCACCATGCTGGCTTTTCTGGCTGCGGGGCTGCTGTGGTTGCCCAGTATGGCGCTGT
GTGCGGCGTTAATCCTGCTGTCCTTTCTGGTGGTGCTGACCGTCATTGATATAAAAACGCTGCTGCTGCCGGATGTGCTT
ACGCTGTCGCTCTTGTGGATAGGGTTGCTGTTTAATCTATCGGAAACGTTTGTCCCATTACGTGATGCCGTAGTAGGGGC
GATGGCGGGCTATTTGTCCCTGTGGTTACTTTATTGGGTATTTAAATATACCACTGGCAAAGACGCGCTGGGATACGGTG
ATTTTAAGTTACTGTCTGCGTTGGGAGCCTGGCTAGGCTGGCAGGCATTGCCGAATCTTGTTTTGGTGGCGGCGCTGAGC
GGTCTGGTCATGACGCTTATTTGGCGTGGATTGCGTAAAGAAGATACAACTAAACCGCTGGCCTTTGGCCCCTGGCTGGC
TGTCGGTGGTGTATTCAGTGTGATAATGAACGGGCTATAA
GTGGACGATTTAAGGGAATTTGCGCAGGTGTTTCCAGCATGGTGGTATGGTGCGCTGGGCGTATTGGGATTGATTGTTGG
CAGCTTTCTGAACGTAGTGATTTATCGTTTGCCGATTATGTTGGAACGGCGCTGGCGGCAAGACATCGATCTGCAAACCG
GCGTAACGGATGCCGAGCAGGCTACGCGCTATAACCTGTGCTGGCCGCCTTCGTCTTGCCCACACTGCCAGCAGAGTATT
GCGGTGAAGGATAACATTCCGTTATTCAGTTGGCTGTGGCTGCGCGGTCGTTCCCGATGCTGTCATCAACCGGTGTCTGT
GCAGTATCCGCTGGTGGAAGTCATCACCATGCTGGCTTTTCTGGCTGCGGGGCTGCTGTGGTTGCCCAGTATGGCGCTGT
GTGCGGCGTTAATCCTGCTGTCCTTTCTGGTGGTGCTGACCGTCATTGATATAAAAACGCTGCTGCTGCCGGATGTGCTT
ACGCTGTCGCTCTTGTGGATAGGGTTGCTGTTTAATCTATCGGAAACGTTTGTCCCATTACGTGATGCCGTAGTAGGGGC
GATGGCGGGCTATTTGTCCCTGTGGTTACTTTATTGGGTATTTAAATATACCACTGGCAAAGACGCGCTGGGATACGGTG
ATTTTAAGTTACTGTCTGCGTTGGGAGCCTGGCTAGGCTGGCAGGCATTGCCGAATCTTGTTTTGGTGGCGGCGCTGAGC
GGTCTGGTCATGACGCTTATTTGGCGTGGATTGCGTAAAGAAGATACAACTAAACCGCTGGCCTTTGGCCCCTGGCTGGC
TGTCGGTGGTGTATTCAGTGTGATAATGAACGGGCTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
49.815 |
97.133 |
0.484 |
| pilD | Neisseria gonorrhoeae MS11 |
48.617 |
90.681 |
0.441 |
| pilD | Vibrio campbellii strain DS40M4 |
44.161 |
98.208 |
0.434 |
| pilD | Acinetobacter baumannii D1279779 |
42.857 |
92.832 |
0.398 |
| pilD | Acinetobacter nosocomialis M2 |
42.857 |
92.832 |
0.398 |